Transcription Factor
| Accessions: | Q6Z348 (JASPAR 2024) |
| Names: | CCAAT-binding transcription factor subunit NF-YB1, NFYB1_ORYSJ, Nuclear transcription factor Y subunit B-1, OsNF-YB-1 |
| Organisms: | Oryza sativa |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q6Z348 |
| Length: | 186 |
| Pfam Domains: | 32-92 Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
| Sequence: (in bold interface residues) | 1 MAGNKKRGGRNMDQVKKAAVRSDGVGGSATNAELPMANLVRLIKKVLPGKAKIGGAAKGL 60 61 THDCAVEFVGFVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120 121 RAGGNRRVAPPPPAAATPLTPGGPTFTDAELQFLRSVIPSRSDDEYSGSSPAIGGYGYGY 180 181 GYGKNM |
| Interface Residues: | 34, 37, 52, 55 |
| 3D-footprint Homologues: | 5ay8_E, 6r2v_B, 4awl_B, 4g92_B, 7cvo_B |
| Binding Motifs: | UN0427.1 scGCCCGCGCCss UN0427.2 cGCCCGCGCC |
| Binding Sites: | UN0427.2.11 UN0427.2.3 UN0427.1.15 / UN0427.1.20 / UN0427.1.6 / UN0427.1.7 UN0427.1.2 UN0427.1.1 UN0427.1.10 UN0427.1.11 UN0427.1.12 UN0427.1.13 UN0427.1.14 UN0427.1.15 UN0427.1.16 UN0427.1.17 UN0427.1.18 UN0427.1.19 UN0427.1.2 / UN0427.1.8 UN0427.1.20 UN0427.1.10 / UN0427.1.3 UN0427.1.11 / UN0427.1.4 UN0427.1.18 / UN0427.1.5 UN0427.1.6 UN0427.1.7 UN0427.1.8 UN0427.1.9 UN0427.1.12 UN0427.1.13 UN0427.1.14 UN0427.1.16 UN0427.1.17 UN0427.1.19 UN0427.1.3 UN0427.1.4 UN0427.1.5 UN0427.1.9 UN0427.2.1 UN0427.2.10 UN0427.2.12 UN0427.2.13 UN0427.2.14 UN0427.2.15 UN0427.2.16 UN0427.2.17 UN0427.2.18 UN0427.2.19 UN0427.2.2 UN0427.2.20 UN0427.2.4 UN0427.2.5 / UN0427.2.6 UN0427.2.7 UN0427.2.8 UN0427.2.9 |
| Related annotations: | PaperBLAST |
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