Transcription Factor
| Accessions: | T25504 (AthalianaCistrome v4_May2016), Q9FMJ1 (JASPAR 2024) |
| Names: | ANAC103, AT5G64060, T25504;, NAC domain containing protein 103, Q9FMJ1_ARATH, Similarity to NAM |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 356 |
| Pfam Domains: | 6-134 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGKTNLAPGFRFHPTDVELVRYYLKRKVMGKKFQVDAIAEVDIYKFEPPDLPDKSCLGTG 60 61 DLKWYFFCPREKKYPKGGKANRSTECGYWKTTGRDRDVSYNDEVTGKIRTLIYHYGKIPR 120 121 GDRTDWVIHEYRLEDKVLAQKNVPQDTYVLCVLFKKNGLGPRHGSQYGAPFKEEDWSDKE 180 181 EEYTQNHLVAGPSKETSLAAKASHSYAPKDGLTGVISESCVSDVPPLTATVLPPLTSDVI 240 241 AYNPFSSSPLLEVPQVSLDGGELNSMLDLFSVDNDDCLLFDDFDYHNEVRHPDGFVNKEA 300 301 PVFLGDGNFSGMFDLSNDQVVELQDLIQSPTPHPPSPPAQASIPDDSRSNGQTKDD |
| Interface Residues: | 74, 79, 81, 90, 92, 94, 114, 118, 119, 120, 123 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0676 grwAACTTGbkgwrCAAGthA M0691 TTGywcmmCAAGTTwy UN0350.1 wrgTAACTTGttsagCAAGTTAyc MA2038.1 haCAAGTTAyc MA2038.2 CAAGTTA |
| Binding Sites: | UN0350.1.3 UN0350.1.4 MA2038.1.1 MA2038.1.6 UN0350.1.1 UN0350.1.2 UN0350.1.10 UN0350.1.11 UN0350.1.12 UN0350.1.13 UN0350.1.14 UN0350.1.15 UN0350.1.16 UN0350.1.17 UN0350.1.18 UN0350.1.19 UN0350.1.20 UN0350.1.5 UN0350.1.6 UN0350.1.7 UN0350.1.8 UN0350.1.9 MA2038.1.7 MA2038.1.15 MA2038.1.20 MA2038.1.10 MA2038.1.11 MA2038.1.12 MA2038.1.13 MA2038.1.14 MA2038.1.16 MA2038.1.17 MA2038.1.18 MA2038.1.19 MA2038.1.2 MA2038.1.3 MA2038.1.4 MA2038.1.5 MA2038.1.8 MA2038.1.9 MA2038.2.1 / MA2038.2.10 / MA2038.2.11 / MA2038.2.12 / MA2038.2.13 / MA2038.2.15 / MA2038.2.17 / MA2038.2.18 / MA2038.2.19 / MA2038.2.20 / MA2038.2.3 / MA2038.2.6 MA2038.2.14 / MA2038.2.16 MA2038.2.2 MA2038.2.4 MA2038.2.5 MA2038.2.7 MA2038.2.8 / MA2038.2.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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