Transcription Factor
| Accessions: | UP00311A (UniPROBE 20160601) |
| Names: | Not Available, Ypr013c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Not Av |
| Description: | Putative zinc finger protein; YPR013C is not an essential gene |
| Length: | 114 |
| Pfam Domains: | 52-73 Zinc finger, C2H2 type 52-70 Zinc-finger of C2H2 type 52-73 C2H2-type zinc finger 66-90 Zinc-finger double domain 79-103 Zinc finger, C2H2 type 79-103 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 KSVPPGYGVLPTMQEASNGRTKSEPGAVLNGSATFSDWKTDTRISSTKLRKQCPVCGKIC 60 61 SRPSTLKTHYLIHTGDTPFKCTWEGCTKSFNVKSNMLRHLKSHERKRNKVLNTT |
| Interface Residues: | 35, 36, 37, 38, 39, 40, 43, 61, 62, 63, 64, 65, 67, 68, 69, 91, 92, 93, 94, 95, 96, 97, 98, 99, 101, 102, 103, 104, 107 |
| 3D-footprint Homologues: | 1tf3_A, 7ysf_A, 6ml4_A, 2i13_A, 3uk3_C, 6jnm_A, 8cuc_F, 7y3l_A, 7n5w_A, 1mey_C, 5kl3_A, 2drp_D, 1f2i_J, 6wmi_A, 5k5i_A, 2kmk_A, 8ssq_A, 7w1m_H, 5und_A, 2gli_A, 1g2f_F, 5k5l_F, 2lt7_A, 5v3j_F, 4x9j_A, 8gn3_A, 1llm_D, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 5yel_A, 5ei9_F, 2jpa_A, 4m9v_C, 8h9h_G, 6e94_A, 7eyi_G, 7y3m_I, 6a57_A, 7txc_E, 5yj3_D, 1tf6_A, 2wbs_A |
| Binding Motifs: | UP00311A_1 kkdaayGTARATCmywwymk |
| Binding Sites: | AGTAAATC AGATCTAC AGATTTAC CGATTTAC CGCAGATC CGTAAATC CGTAGATC CGTCGATC GATCGGCA GATCTACA GATCTGCA GATTTACA GATTTGCA GCAGATCA GGATCTAC GGATTTAC GTAAATCA GTAGATCA CGCCGATC GCCGATCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.