Transcription Factor
| Accessions: | T061570_1.02 (CISBP 1.02) |
| Names: | T061570_1.02;, ZC328.2 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 386 |
| Pfam Domains: | 247-269 Zinc finger, C2H2 type 247-269 C2H2-type zinc finger 262-285 Zinc-finger double domain 275-297 C2H2-type zinc finger 275-297 Zinc finger, C2H2 type 289-312 Zinc-finger double domain 303-326 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MNKRPTMIIPPTVEISTIIDVATPSSSADTENRGDGESSVFIGQLQHPPLRRRPVSAMAS 60 61 LPWVAYQAPREDGTDDEDLAVDSTLFLSTSPGIGFGSSMPGGSVSSLALSPPGLSPLNFN 120 121 DGSPFSLSSTPSSTSSLVRNQNRFTFDHIPFIGSSTNSTPATASTGPPGLSPGGAALNIE 180 181 HEKSAFEIVSCHHQSAEEILQRVRLGTSGSTSSANNLRNSLSEATTTTTGSVESTSGTAD 240 241 GSAPGQYYCFICEKDFRRPDILSRHTRRHTGEKPFKCEDCGRFFSRSDHLRTHRRTHTDE 300 301 KPYHCCVCNYSARRRDVLTRHMSTRHQAIAPPSILGTHRNVRRCLSDGDYHKMAAQELRQ 360 361 RHQATREEVEVPPMEDIEDDVIVDDL |
| Interface Residues: | 233, 234, 236, 237, 240, 256, 257, 258, 259, 260, 261, 263, 264, 265, 270, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 296, 309, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 325 |
| 3D-footprint Homologues: | 2jpa_A, 6blw_A, 7ysf_A, 8gn3_A, 8cuc_F, 7y3l_A, 7n5w_A, 6jnm_A, 2kmk_A, 6ml4_A, 5v3j_F, 5k5l_F, 4x9j_A, 2gli_A, 1f2i_J, 5kkq_D, 5ei9_F, 1g2f_F, 5kl3_A, 1ubd_C, 5k5i_A, 4m9v_C, 8h9h_G, 2lt7_A, 6e94_A, 1tf6_A, 7y3m_I, 6a57_A, 7w1m_H, 3uk3_C, 2drp_D, 8ssq_A, 6u9q_A, 5yel_A, 2wbs_A, 5yj3_D, 7txc_E, 1llm_D, 1tf3_A |
| Binding Motifs: | M0544_1.02 tgcGkGGGyg |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.