Transcription Factor

						

			
Accessions: Q4H3J1 (JASPAR 2024)

			
Names: Q4H3J1_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3J1
Length: 578
Pfam Domains:   208-303 Fork head domain
Sequence: 
(in bold interface residues)		   1 MLTYYHEIHGVHHSSPHIHAKNPSNQRIPHDQPASFSSNHRYSHYPIQPGHFEQGNPHSY   60
  61 LDRQYPNPSSYAPPVVKDASRNQQPFHSTPTCEPPRSEVAFTPCNPTYDELQRKDEATQQ  120
 121 FTDIGRTDLQTPAEVEQTLLEIDDKVDLAESDETVTKLSECSVDDVTAVDDESLDEKNRE  180
 181 NVKTTMDCDVITTTSSGRRRKRPIQRGKPPYSYIALISMAIASSPERKLTLGHIYKFIME  240
 241 RFPFYREQNKKWQNSIRHNLTLNDCFIKLPREPGKPGKGNYWTLDPAAEDMFDNGSFLRR  300
 301 RKRFKRSDTEKAFLSSYMHDQSAFTPTNALKQYSTHPHTPSNAYYGQPGVVGGNYLQPIM  360
 361 HPGSAGAPVHQMMGHYGAPMTVSPNVTNARMFSIENIIGHPRPNENLPPEVSEYSDNMRH  420
 421 DGLNSERDLLDRDGTNNVDRSLQANTSSESQPSPSSGLYGAMTSPSVRGIICNNESVSTC  480
 481 YAYHTPTTTNPHCYTGSTGSPYGVTSNQRLTSLPIKPSYHSAFANPVHHYHSDVTNMTSL  540
 541 STDFTSLQTPGQFNSLPSSTYRRPPANYGGFDKYIHTI
Interface Residues: 203, 205, 251, 253, 254, 255, 257, 258, 259, 261, 262, 271, 278, 300, 303
3D-footprint Homologues: 7yzb_A, 7vox_H, 2hdc_A, 7tdx_A, 3l2c_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 3qrf_G
Binding Motifs: MA1863.1 ddwkkkkTTGTTTwtwtwrk
MA1863.2 TTGTTT
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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