Transcription Factor
| Accessions: | T161789_1.02 (CISBP 1.02) |
| Names: | T161789_1.02;, vad-5 |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Zinc cluster |
| Length: | 1139 |
| Pfam Domains: | 174-211 Fungal Zn(2)-Cys(6) binuclear cluster domain 357-538 Fungal specific transcription factor domain |
| Sequence: (in bold interface residues) | 1 MAAASSHNNNNKPSCPRSPVDPSTGTPLFDESPVSSATSAKPHAPQQPYLGGLTSTTPSA 60 61 TVPGTTPASSVPASAPRPPSPRSLPQPPHPPRISTLASSSTENLLGHQVSHQNSSFHSYT 120 121 PATTATPFTMGGRDSLPSNDSVSGTPGPSSGHQLPSSSSQAQKRAYRQRRKDPSCDACRE 180 181 RKVKCDATDTTSCSECSSRNVKCQFTKETNRRMSSIKQVQDLEKTLDKLKRENLNLKRAL 240 241 ETQGHGVHGHVNHSLGRGQAHMPMDRMDIDSGPVVGGMGIEQMLALLLPEIGAEPKPKKR 300 301 PVPIPALAQARSNIRIPAKGVWKPPAQYRHSPAGPSIFDYTPRPELPSQQTTDHLMRCYY 360 361 SSAHTMTPIIHWPTFRQEVDNLYRPGGLTQHVPTSFLAMFYAVLAVGALFSPDPHRSYRA 420 421 AEWIEASRKLIDPWGNDFVLDHARSLVFISIALNELNLKSAAWNWLGNAVKVAQDIGLHS 480 481 DMGSWPLIEKEMRKRTWWSIYILDRSLSLELGRPMLIDDVDCDVPLPMGVDDHFIRDNGM 540 541 VVPNGAEPLTHSLLAITHVVRSYTALGRLLSLSGNEGPMLHNRNEFMSPAIPPARLATFD 600 601 QYFASCLRTFPPACDPSSGSPLAPVLLNPLIYLLHARLLLHRQNLSPQCPPDSRLLAVEQ 660 661 CTNIALETAAYLKRMTPTLPEGATALTTMHIFRCALFLLLIGHLDQALVCIRELAAINTN 720 721 REVAVPCGRYLLFFVGVVGQKRSDYLQRIMMTGSPEPAPVRLRNALVRDEELIAYVSADL 780 781 QARPDTAWIWAGGEQDHAAAAAAAAAAGRVVGSTSGSSHGGANGLGTLFSEEAKMGLSKE 840 841 EINEWNVNKGWTRLDEMVRGLAHPLAVPLAQVPMVPSTSSQTPTSATRPTHSLASTPTSA 900 901 TAPPPPYSQGPPPPVTVSGPHPPPPPPVHYSHHAPPPPPPPPPPPPPSARGRQMPPIQPG 960 961 PSPQQPPPPASWGHPTSGPTLPPPQQARSPYIPPHAHHPQGPPPPAQPPTLPSISPAGTP 1020 1021 RIKSEPGLPSLPPLGGDRDDKRPIGLGIGGGGGGERGPASAISPSNRAAVLQSSVGGGHG 1080 1081 AGSPTLSVSRSPISATTTPTTAMMPNGILNPIGGKENANLKPPAIKSQSQERISIANII |
| Interface Residues: | 168, 169, 179, 181, 182, 183, 184, 198, 199, 210, 212, 213, 668, 670, 671, 676 |
| 3D-footprint Homologues: | 1f5e_P, 2er8_C, 1hwt_C, 1pyi_A, 3coq_A, 1d66_B, 1zme_D, 7uik_T, 7eu9_A |
| Binding Motifs: | M1752_1.02 wtdycgrhaw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.