Transcription Factor

						

			
Accessions: T130451_1.02 (CISBP 1.02)

			
Names: ENSDARG00000078676, T130451_1.02;
Organisms: Danio rerio
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Ndt80/PhoG
Length: 593
Pfam Domains:   323-468 NDT80 / PhoG like DNA-binding  family
  516-563 Chaperone of endosialidase
Sequence: 
(in bold interface residues)		   1 METVIDETEALQRFFEGHDINSSLEPANIDTSILEEYISKEDDSADICFTEVHSGPAPQF   60
  61 SSAQAGASSSGGVGCGVSPPIPLRQSTVPSLSQSCQNPYPGAPPLGHIRHNYPCLGQQQT  120
 121 QNIKPDHRGQYAPGTLPESPPDSSSEPYSPQQANDPHMLRTMTPENMCHMTSPPPLQTHP  180
 181 HYPSMHRDMYLKPEPMISQYPIGPASGGGGDMQQTQMLHQLLQHPQTPDGMPVHPAKKRK  240
 241 HSDSPNNTLNSQMLTGMIKQEPGLMQDAENSYLDPNYQCIKWQAHQQNKWTTLYDSSGKE  300
 301 LPMPTYRVDADKGFNFSLADDAFVCQKKNHFQVTVYIGMPGDPKYVKTSDGLQPIDCFYL  360
 361 KLNGVKLEAMNQSINVEQSQSDRSKRPFKPVLVTLPPEQVTKVTVGRLHFSETTANNMRK  420
 421 KGKPNPDQRYFMLVVSLQAQCHSQSFSVAAHVSERIIVRASNPGQFESDSEVLWQRGQLP  480
 481 DSVYHHGRVGINTDRPDEALVVHGNVKVMGSLVHPSDIRAKENVKEVDTTDNLRRISQMR  540
 541 LVHYQYKPEFAATVGIDATAETGTVRAYTSDSINVHISVCAYISPPNQKKNMF
Interface Residues: 62, 64, 169, 170, 171, 172, 174, 175, 181, 546, 547
3D-footprint Homologues: 3x1l_D, 3twm_A, 3u3w_B, 2voa_B
Binding Motifs: M1417_1.02 TGGTACCr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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