Transcription Factor
| Accessions: | T24304 (AthalianaCistrome v4_May2016) |
| Names: | AT5G45580, T24304; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 264 |
| Pfam Domains: | 9-60 Myb-like DNA-binding domain 111-158 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60 61 LGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQV 120 121 DAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPCGNAGETDKGQFSDFNLALSG 180 181 LVGSDRKNEKAGLVTDISHLNGGDSSQEFRLCGEQEKIETGDACVKPESGFVHFDLNSKS 240 241 GYDLLNCGKYGIEVKPNVIGDRLQ |
| Interface Residues: | 9, 49, 50, 53, 54, 57, 58 |
| 3D-footprint Homologues: | 6j5b_C, 6qec_A, 7d3t_D |
| Binding Motifs: | M0378 aaarGAATmTTyyw M0375 aaaarGAATmTTyy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.