Transcription Factor
| Accessions: | T012378_1.02 (CISBP 1.02), Q0JXE7 (JASPAR 2024), T06238 (AthalianaCistrome v4_May2016) |
| Names: | T012378_1.02;, ZCW32, AtbHLH31, Basic helix-loop-helix protein 31, bHLH 31, bHLH transcription factor bHLH031, BPE_ARATH, Protein BIG PETAL, Transcription factor BPE, Transcription factor EN 88, AT1G59640, bHLH31, T06238; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH, ecotype:Col-0, experiment type: DAP-seq |
| Length: | 343 |
| Pfam Domains: | 146-193 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDPSGMMNEGGPFNLAEIWQFPLNGVSTAGDSSRRSFVGPNQFGDADLTTAANGDPARMS 60 61 HALSQAVIEGISGAWKRREDESKSAKIVSTIGASEGENKRQKIDEVCDGKAEAESLGTET 120 121 EQKKQQMEPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 180 181 VLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKEVMILMIINSIFSIFFTKQY 240 241 MFLSRYSRGRSLDVYAVRSFKHCNKRSDLCFCSCSPKTELKTTIFSQNMTCFCRYSRVGV 300 301 AISSSKHCNEPVTLCFYSYCLRKIYHFLLWNLKYKIQKSVLFS |
| Interface Residues: | 147, 148, 150, 151, 154, 155, 178 |
| 3D-footprint Homologues: | 7d8t_A, 4h10_B, 5nj8_D, 1a0a_B, 7ssa_L, 4zpk_A, 5v0l_A, 1am9_A, 7xi3_A, 5eyo_A, 6g1l_A, 4h10_A, 8osl_O, 5gnj_I, 8osl_P |
| Binding Motifs: | M0153_1.02 sscACGTGs M0162 / MA1359.1 swkgwgrCACGTGbswwwcwc MA1359.2 rwgcCACGTGgcay MA1359.3 CACGTG |
| Binding Sites: | MA1359.3.1 / MA1359.3.10 / MA1359.3.11 / MA1359.3.12 / MA1359.3.13 / MA1359.3.14 / MA1359.3.15 / MA1359.3.16 / MA1359.3.17 / MA1359.3.18 / MA1359.3.19 / MA1359.3.2 / MA1359.3.20 / MA1359.3.3 / MA1359.3.4 / MA1359.3.5 / MA1359.3.6 / MA1359.3.7 / MA1359.3.8 / MA1359.3.9 MA1359.1.1 MA1359.1.10 MA1359.1.11 MA1359.1.12 MA1359.1.13 MA1359.1.14 MA1359.1.15 / MA1359.1.18 MA1359.1.16 MA1359.1.17 MA1359.1.19 MA1359.1.2 MA1359.1.20 MA1359.1.3 MA1359.1.4 MA1359.1.5 MA1359.1.6 MA1359.1.7 MA1359.1.8 MA1359.1.9 MA1359.2.1 MA1359.2.10 MA1359.2.11 MA1359.2.12 MA1359.2.13 MA1359.2.14 MA1359.2.15 MA1359.2.16 MA1359.2.17 MA1359.2.18 MA1359.2.19 MA1359.2.2 MA1359.2.20 MA1359.2.3 MA1359.2.4 MA1359.2.5 MA1359.2.6 MA1359.2.7 MA1359.2.8 MA1359.2.9 |
| Publications: | Fernández-Calvo P, Chini A, Fernández-Barbero G, Chico J.M, Gimenez-Ibanez S, Geerinck J, Eeckhout D, Schweizer F, Godoy M, Franco-Zorrilla J.M, Pauwels L, Witters E, Puga M.I, Paz-Ares J, Goossens A, Reymond P, De Jaeger G, Solano R. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. The Plant cell 23:701-15 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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