Transcription Factor
| Accessions: | T139184_1.02 (CISBP 1.02) |
| Names: | Smp_170910, T139184_1.02; |
| Organisms: | Schistosoma mansoni |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:RFX |
| Length: | 1015 |
| Pfam Domains: | 175-241 RFX DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MIASDSTSSRPPTSGVETSLLQTAHSNNSQTIYPAHYIEAIAEQTVYTANGEGGGILEIK 60 61 SGTPLRKLFASVTKSLSGQYQEYTPIIYAPVSGGQTYYQTANGQVLATAFGAANSATGHV 120 121 GALHTAAAAHANLTATSGVGHAQLVTHQGATYLVQSSQLDDDGSSISHTAKASPVTVQWL 180 181 VDNYETAEGVSLPRSTLYFHYLQHCNEHKLEPMNPASFGKLIRSVFYGLRTRRLGTRGNS 240 241 KYHYYGIRIKPNSPLNHFIEDAGFSLRHYPNYHHKSMLNNNNYIGSGNVSSHSTSQNIDS 300 301 VTTNSITSPLLSSSGVGNGQHHAHFLGEASSALPNLDEICRSSGLPVPSEDVITFCRLYA 360 361 LSAGYMLDAVVNLDFTSIETVWKAFWYDVNCVPLSLTTCSGTPKRLNNCRSFLTVQLAVG 420 421 CSMVKISGHLLYSSTTRRLKHQSMKTLIVELSHVSRSRPPSREISLYLMFSFSPPNVIFT 480 481 FFITSLPSSVVYFSFFLSLSLDLQEQASWVCQCSDSTVSQLEHDFKRILQKHASLEEWAQ 540 541 WLDTVVTSILQPLEGNSLAYTRAAHQLVLKWSFYSSMVIRDLTLRSASSFGSFHLIRLLY 600 601 DEYIFYLVEHKVAAHLGMTPVAVMGEMGRDITQQHCTQNRLHLDNRNVPGKSSKSIHNNN 660 661 NNTTINSPQHDNSNYLPFVNDDNDNNNDVDHTNSIFHHHQQQHSIKDRVVVVVGNDDCNP 720 721 DTNTDDVIKAHASAQAYCRNSSVAATNTSTILIPQSLDSTDNLLSNTGMEKDTLVMEDEI 780 781 NHEKQSNIEEVIVNDPHDNNNDIVDEEEEEEELVVKNIEEGTSNNKNKLEKLTQKHSNLF 840 841 NNDKISSSTPAELTIQQSNKDKMSISTTTTTTTGSCSPPSIVTMPNPVRKVVRVTTFCDA 900 901 KQPPVVVESSFANSTPSTTTIATTPTTTIRSINIKQSSSGSSSTISTPTITINCNRPPIE 960 961 IHPSSLHITTTTPSSMINSSSGNTTTILNKLTVTTTTTSSTIPTDIIYAKRPKLS |
| Interface Residues: | 216, 220, 233, 237, 242 |
| 3D-footprint Homologues: | 1dp7_P |
| Binding Motifs: | M1538_1.02 GTTGCTAd |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.