Transcription Factor
Accessions: | Q4H3E4 (JASPAR 2024) |
Names: | Fragment, Q4H3E4_CIOIN, Transcription factor protein |
Organisms: | Ciona intestinalis |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | Q4H3E4 |
Length: | 248 |
Pfam Domains: | 34-84 Helix-loop-helix DNA-binding domain 104-144 Hairy Orange |
Sequence: (in bold interface residues) | 1 IKMKRDYARSDSDNDDAKRFDTPSQTSARKKRRGVIEKRRRDRINNSLSELRRMIPAASE 60 61 KHGSSKLEKAEILQLTVEHLKTLQSAISKGYFPFMDVRTMAVDYHSFGFRECVSEVARYM 120 121 ISMDGIQSSVRENLLSHLQNVMTHKPTVPPQPWPATINNVIRPHYVTSGHVMLHDAALMF 180 181 DDVKNKLTNQRLVPTFPPKSTMISNIRGSENIGHISRKDGAPIPAGCSEDRRSVRNTYRP 240 241 WVAELSLL |
Interface Residues: | 29, 30, 32, 33, 34, 36, 37, 40, 41, 67, 69 |
3D-footprint Homologues: | 7f2f_B, 7z5k_B, 1an4_A, 7ssa_L, 5sy7_B, 7d8t_A, 5v0l_A, 4h10_B, 6g1l_A, 5eyo_A, 1am9_A, 7xi3_A, 4h10_A, 2ql2_D, 8osl_O, 4zpk_A, 1a0a_B, 5nj8_D, 2ypa_A, 8osl_P, 5gnj_I, 5nj8_C, 5v0l_B |
Binding Motifs: | MA1880.1 sssssgrCACGTGccvcsbsss MA1880.2 CACGTGcc |
Publications: | José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.