Transcription Factor
| Accessions: | Q9FX84 (JASPAR 2024), T00982 (AthalianaCistrome v4_May2016) |
| Names: | HHO6_ARATH, MYB-domain transcription factor HHO6, Protein HRS1 HOMOLOG 6, Transcription factor HHO6, AT1G49560, T00982; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 333 |
| Pfam Domains: | 194-245 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGSLGDELSLGSIFGRGVSMNVVAVEKVDEHVKKLEEEKRKLESCQLELPLSLQILNDAI 60 61 LYLKDKRCSEMETQPLLKDFISVNKPIQGERGIELLKREELMREKKFQQWKANDDHTSKI 120 121 KSKLEIKRNEEKSPMLLIPKVETGLGLGLSSSSIRRKGIVASCGFTSNSMPQPPTPAVPQ 180 181 QPAFLKQQALRKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSH 240 241 LQKYRLHIRKPNSNAEKQSAVVLGFNLWNSSAQDEEETCEGGESLKRSNAQSDSPQGPLQ 300 301 LPSTTTTTGGDSSMEDVEDAKSESFQLERLRSP |
| Interface Residues: | 194, 234, 235, 238, 239, 242, 243 |
| 3D-footprint Homologues: | 7d3t_D, 6j5b_C, 6qec_A |
| Binding Motifs: | M0388 / MA1165.1 ATcaaAGATTC M0382 rGaATCmaAGATTCy MA1165.2 whaaAGATTCtkww MA1165.3 AGATTCt |
| Binding Sites: | MA1165.3.12 MA1165.1.1 / MA1165.1.3 MA1165.1.10 MA1165.1.11 MA1165.1.12 MA1165.1.13 MA1165.1.14 MA1165.1.15 MA1165.1.16 MA1165.1.17 MA1165.1.18 MA1165.1.19 MA1165.1.2 MA1165.1.20 MA1165.1.4 MA1165.1.5 MA1165.1.6 MA1165.1.7 MA1165.1.8 MA1165.1.9 MA1165.2.1 MA1165.2.10 MA1165.2.11 MA1165.2.12 MA1165.2.13 MA1165.2.14 MA1165.2.15 MA1165.2.16 MA1165.2.17 MA1165.2.18 MA1165.2.19 MA1165.2.2 MA1165.2.20 MA1165.2.3 MA1165.2.4 MA1165.2.5 MA1165.2.6 MA1165.2.7 MA1165.2.8 MA1165.2.9 MA1165.3.16 / MA1165.3.3 / MA1165.3.8 MA1165.3.11 MA1165.3.1 / MA1165.3.10 / MA1165.3.13 / MA1165.3.14 / MA1165.3.15 / MA1165.3.17 / MA1165.3.18 / MA1165.3.4 / MA1165.3.6 / MA1165.3.9 MA1165.3.19 / MA1165.3.2 MA1165.3.20 MA1165.3.5 / MA1165.3.7 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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