Transcription Factor

						

			
Accessions: T105892_1.02 (CISBP 1.02)

			
Names: hsf2, T105892_1.02;
Organisms: Danio rerio
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:HSF
Length: 489
Pfam Domains:     9-112 HSF-type DNA-binding
  228-464 Vertebrate heat shock transcription factor
Sequence: 
(in bold interface residues)		   1 MKHSSNVPAFLTKLWTLVEDSDTNEFICWSQEGNSFLVLDEQRFAKEILPKFFKHNNMAS   60
  61 FVRQLNMYGFRKVMHIDSGIVKQERDGPVEFQHPYFKHGQDDLLENIKRKVSNARPEESK  120
 121 IRQDDLSKILTSVQSVHEQQENMDARLATLKRENEALWTELSDLRKVHVQQQQVIKELVQ  180
 181 FIFTLVQNNRLLNLKRKRPLALNINGKKSKFIHQLFEEPIDHSKTTVNGLKNNSDISDDV  240
 241 IICDITDEDPEVTDGISVPDEEDAEIVEITYESSPKTVRQDSANGTIVNSTAHQEAEPKT  300
 301 TPDVSTTNSALQLNKPSCLSLEDPMKLMDSILSENGAISQNINLLGKVELMDYLDSIDCS  360
 361 LEDFQAMLYGKQFNIDPDIIEETISETKNNNSKANKENLDSENTDKQLIQYTTCPLMAFL  420
 421 DGCTPLTPSDPQPEDPPDLLDESLEMETPRSSLIRLEPLTEAEANEATLFYLCELNSDLP  480
 481 NADTPPLDI
Interface Residues: 54, 55, 60, 62, 63, 64, 66, 67, 109
3D-footprint Homologues: 5hdn_C, 5d5w_B, 3hts_B, 5d5v_B, 7dci_A
Binding Motifs: M1249_1.02 gaawGTTCTATat
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.