Transcription Factor
| Accessions: | UP00611E (UniPROBE 20160601) |
| Names: | AN, AN2, Aniridia type II protein, D11S812E, MGC17209, MGDA, Oculorhombin, paired box protein Pax-6, PAX6_P68S, WAGR |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | paired box protein Pax-6: This gene encodes paired box gene 6, one of many human homologs of the Drosophila melanogaster gene prd. In addition to the hallmark feature of this gene family, a conserved paired box domain, the encoded protein also contains a homeo box domain. Both domains are known to bind DNA and function as regulators of gene transcription. This gene is expressed in the developing nervous system, and in developing eyes. Mutations in this gene are known to cause ocular disorders such as anir |
| Length: | 282 |
| Pfam Domains: | 4-128 'Paired box' domain 212-267 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60 61 YETGSIRSRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQ 180 181 EGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFAR 240 241 ERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTP |
| Interface Residues: | 17, 49, 50, 52, 54, 55, 71, 74, 77, 119, 120, 121, 122, 124, 125, 128, 190, 193, 194, 197, 211, 212, 213, 214, 252, 253, 255, 256, 259, 260, 263, 264, 267, 270 |
| 3D-footprint Homologues: | 6pax_A, 1k78_A, 1pdn_C, 5zfz_A, 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 3d1n_M, 3lnq_A, 2lkx_A, 1nk2_P, 1jgg_B, 1zq3_P, 6m3d_C, 6es3_K, 7q3o_C, 2ld5_A, 5zjt_E, 1au7_A, 4j19_B, 3a01_E, 1fjl_B, 5hod_A, 1b72_A, 2hdd_A, 7psx_B, 1ig7_A, 5jlw_D, 3rkq_B, 2r5y_A, 1puf_B, 4xrs_G, 2hos_A, 4cyc_A, 5flv_I, 3l1p_A, 1le8_A, 2xsd_C, 1e3o_C, 7xrc_C, 1k61_B, 1mnm_C, 8g87_X, 4qtr_D, 1du0_A, 1o4x_A, 1le8_B |
| Binding Motifs: | UP00611E_1 mwmacmwCCAAGwGTCrwmrtya |
| Binding Sites: | AACTCCGT GCATATGC AACTGTCC ACGTAGAG ACTACGAG ACTCGTCG ACTGAGAG ACTTCCAG AGCGCTGC AGTTTGTG CACGGCTA CCGATCGG CCGTCAGA CCTCAAGG CTCTAGAG GATCCAGA GGCTTTTA GGTCACAC GTGCGGCA TACGTAGA |
| Publications: | Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.