Transcription Factor
| Accessions: | UP00227A (UniPROBE 20160601) |
| Names: | Duxl, Not Available, RIKEN cDNA 1110051B16 gene |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q3UY88 |
| Description: | RIKEN cDNA 1110051B16 gene |
| Length: | 170 |
| Pfam Domains: | 14-69 Homeobox domain 94-148 Homeobox domain |
| Sequence: (in bold interface residues) | 1 ELSCXTGLLEKEARRRRIILTQSQKDTLRVWFEKNPNPDLATRGHLAKELGISESQIMTW 60 61 FQKHRKIRKQAEFACCSEESQEQEQDKPRVKEARRSRTHFTKFQTDILIEAFEKNRFPGI 120 121 VTREKLAQQTGIPESRIHIWFQNRRARHPDPGQNTQKTPHPPQSSQGPTQ |
| Interface Residues: | 14, 15, 17, 53, 54, 55, 56, 58, 59, 62, 63, 65, 66, 70, 77, 80, 94, 95, 96, 97, 123, 135, 136, 138, 139, 142, 143, 146, 147 |
| 3D-footprint Homologues: | 3d1n_M, 5zfz_A, 1nk2_P, 3l1p_A, 1au7_A, 2h8r_B, 8g87_X, 1fjl_B, 6a8r_A, 3cmy_A, 1ig7_A, 1puf_A, 2h1k_B, 2lkx_A, 1zq3_P, 1jgg_B, 6m3d_C, 3lnq_A, 7q3o_C, 6es3_K, 2ld5_A, 1b72_A, 3rkq_B, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 2d5v_B, 5flv_I, 2hos_A, 1puf_B, 5zjt_E, 3a01_E, 7psx_B, 5hod_A, 1qpi_A, 5jlw_D, 1e3o_C, 1le8_A, 4xrm_B, 1du0_A, 4qtr_D |
| Binding Motifs: | UP00227A_1 yrAccYAATCAAcgrws |
| Binding Sites: | AATCAATC ACTGATTG ATCAATCA ATTGATTA ATTGATTG CAATCAAA CAATCAAC CAATCAAG CCAATCAA CCAATCAG CCCAATCA CTAATCAA CTCAATCA CTGATTGA GCAATCAA GTTGATTA TCAATCAA TCCAATCA TCTAATCA TTAATCAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.