Transcription Factor

						

			
Accessions: T082899_1.02 (CISBP 1.02)

			
Names: NCU08634, T082899_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Forkhead
Length: 540
Pfam Domains:   171-243 Fork head domain
Sequence: 
(in bold interface residues)		   1 MNSSNSYMLSLQATRSQTSSPVACVGGMTEGKTQVGTSLWNPSVRAQTGSDEFEHYAFHS   60
  61 TAGSSTAPTNGISSLSQESEYPPSPCSSIPNNFKLDCDSDTSMLSTAPASEAGDNFLVSN  120
 121 PYPVYNLLGDSNMNGISTCSSVSSPVSPSASLDSTPTAASILPGNSKAELPYAQLIYKAF  180
 181 MSTPNKAMTLQDIYQWFRENTEKGKSDTKGWQNSIRHNLSMNHAFTKRERKPEGSTNTNM  240
 241 NDEDNSASTDSNNSDNKKSTEWYLEPWAIKGGVQSTTRYRKGNHASRRAAAASACNASRR  300
 301 HMKDGKYDLYSTSMSTLYRSSPSLTSRNKISKSSNRATLRSNGTAPTELQMHYYTSSHHI  360
 361 PQQHPFEVSMVTSAPEQHYNPYMSPVSARPAVTHSLPEIMSMSATSAPSCAADFYESYTD  420
 421 PAILASSLEQQQQQQQQQQQQQGQAQREASEPISVMNEPITPEASFGSPPLMATNPTSSS  480
 481 ASYYPSPEDHAMSFANVHHHAGYHQPQVYQGESRYGHHNGWEHTQGVAVSATGMMYGHYA  540
Interface Residues: 208, 210, 212, 213, 214, 216, 217, 218, 220, 221, 230, 235, 237
3D-footprint Homologues: 3l2c_A, 7vox_H, 2hdc_A, 3g73_A, 7yz7_A, 6el8_A, 7tdx_A, 7yzb_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3qrf_G
Binding Motifs: M0745_1.02 trrCAAACAb
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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