Transcription Factor
| Accessions: | T057800_1.02 (CISBP 1.02) |
| Names: | Blimp-1, T057800_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:B1H, family:C2H2 ZF |
| Length: | 1203 |
| Pfam Domains: | 877-899 Zinc finger, C2H2 type 877-899 C2H2-type zinc finger 891-916 Zinc-finger double domain 905-927 C2H2-type zinc finger 905-927 Zinc finger, C2H2 type 919-944 Zinc-finger double domain 933-955 Zinc finger, C2H2 type 933-955 C2H2-type zinc finger 934-953 Zinc-finger of C2H2 type 947-972 Zinc-finger double domain 961-983 C2H2-type zinc finger 975-998 Zinc-finger double domain 989-1010 Zinc finger, C2H2 type 989-1010 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MHGHHNHNHLPQQQPQNPQEQQSGAIMKAANQPHHPAHSHPLNHPHPHQHAQPHPHPHPH 60 61 PHHKLSARRARSRSRSRSPTPDGNQDYDVTRMREEDFERLAVYLVPDVQAERGLPNRADK 120 121 TLPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNKARYFWRI 180 181 FKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYFYTTRDILPNEELMVW 240 241 YCKDFASRLGYDVDPETTIFGACKQAVEAEEEADEEEEEAEGEDGKPRYSMPAPEIPPDV 300 301 AVSHITYVMGLHLPVGAGNGPANGSVAGSVSGATPPPPTATPCCRRSSPPAHVSTTTSTC 360 361 NAHHPHIQHGRHASVIIGQDRSPMASSDKDTAGSPLSGLDHQMTPQDGSVRSVRSDEGYH 420 421 SNECHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKPSSSPPAVVMANTTT 480 481 NSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQEMSLPQEE 540 541 EEDQVMHPEPDSICPSTTTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEH 600 601 NSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSILETILTSQHRLEAAAAAANACRQA 660 661 NAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQNPEQLSSSAVVVGEQEMTRATMI 720 721 KGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAATSTFHSPPH 780 781 SSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPD 840 841 GNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHS 900 901 GERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKP 960 961 YACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEE 1020 1021 ELAMAAAATSECLDKDHPEPDSREAYEQLTQHMHPAVHPGLRHLSSGGQSPPRLIPLGNH 1080 1081 MAPQQQSHQQQQQQHQQQGVPPPHLLMTQHSVGPAPMLLTTASQLPPPPPHHQQNSPSRL 1140 1141 LQHGHAHPLQMQQQQQQQQQHSPKGLKSLPESGVYLHGQHVQAQESRPSVIESSNQPMII 1200 1201 ECT |
| Interface Residues: | 877, 885, 887, 888, 889, 890, 891, 893, 894, 895, 912, 914, 915, 916, 917, 918, 919, 921, 922, 923, 924, 925, 928, 943, 944, 945, 946, 947, 948, 949, 950, 951, 953, 954, 971, 972, 973, 974, 975, 977, 978, 1000, 1001, 1002, 1003, 1004, 1005, 1006 |
| 3D-footprint Homologues: | 2kmk_A, 5kkq_D, 3uk3_C, 8cuc_F, 1tf3_A, 7y3l_A, 6ml4_A, 5v3j_F, 8gn3_A, 1tf6_A, 6u9q_A, 5ei9_F, 8ssq_A, 7w1m_H, 8ssu_A, 2lt7_A, 7y3m_I, 2i13_A, 6e94_A, 6wmi_A, 5yel_A, 1ubd_C, 2gli_A, 7n5w_A, 6jnm_A, 1g2f_F, 6blw_A, 4x9j_A, 7txc_E, 5yj3_D, 1mey_C, 5und_A, 2drp_D, 4m9v_C, 8h9h_G, 7eyi_G, 7ysf_A, 6a57_A, 2jpa_A, 1llm_D, 5kl3_A, 1f2i_J, 5k5i_A, 2wbs_A |
| Binding Motifs: | M4767_1.02 rAAAGTGAAAGY |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.