Transcription Factor
| Accessions: | Q8GUN5 (JASPAR 2024), T26482 (AthalianaCistrome v4_May2016) |
| Names: | Myb-like transcription factor 1, PHL1_ARATH, Protein PHR1-LIKE 1, At5g29000, T26482; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:G2-like |
| Length: | 413 |
| Pfam Domains: | 233-284 Myb-like DNA-binding domain 319-365 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MTLANDFGYSTAMSSSYSALHTSVEDRYHKLPNSFWVSSGQELMNNPVPCQSVSGGNSGG 60 61 YLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDRLAMQDCPLIAQSSLINHHPQEFIDP 120 121 LHEFFDFSDHVPVQNLQAESSGVRVDSSVELHKKSEWQDWADQLISVDDGSEPNWSELLG 180 181 DSSSHNPNSEIPTPFLDVPRLDITANQQQQMVSSEDQLSGRNSSSSVATSKQRMRWTPEL 240 241 HEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKPETSEVTGEPQ 300 301 EKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMF 360 361 EKQQKIQDNKSSSSEASPKQCNGSFAEVEVGLETLTGDQNESASASRKRVRED |
| Interface Residues: | 233, 273, 274, 277, 278, 281, 282 |
| 3D-footprint Homologues: | 6qec_A, 7d3t_D, 8xas_E, 6j5b_C |
| Binding Motifs: | M0393 / MA1389.1 aarGAATATTCbaww MA1389.2 aarGAATATTCb |
| Binding Sites: | MA1389.1.1 MA1389.1.10 MA1389.1.11 MA1389.1.12 MA1389.1.13 MA1389.1.14 MA1389.1.15 MA1389.1.16 MA1389.1.17 MA1389.1.18 MA1389.1.19 MA1389.1.2 MA1389.1.20 MA1389.1.3 MA1389.1.4 MA1389.1.5 MA1389.1.6 MA1389.1.7 MA1389.1.8 MA1389.1.9 MA1389.2.1 MA1389.2.10 MA1389.2.11 MA1389.2.12 MA1389.2.13 MA1389.2.14 MA1389.2.15 MA1389.2.16 MA1389.2.17 MA1389.2.18 MA1389.2.19 MA1389.2.2 MA1389.2.20 MA1389.2.3 MA1389.2.4 MA1389.2.5 MA1389.2.6 MA1389.2.7 MA1389.2.8 MA1389.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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