Transcription Factor

						

			
Accessions: T057631_1.02 (CISBP 1.02)

			
Names: F10B5.3, T057631_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 471
Pfam Domains:    35-131 BTB/POZ domain
Sequence: 
(in bold interface residues)		   1 MEEDNQSPSPSESSIKTDYDAKIRVLYSTKNNKSEEESVFAHRLVLSTFSPLFQQLLQDA   60
  61 TSSSTSTTSSTSSDDVISISLDLTAFPNALAAFKVILEALYTGDIKMKSVAANEVLAVSR  120
 121 HCQISSLEPKIMSAVAPLPLNLANILNCSQSVPLNSNPFLQYTSPPIQNYLSSMISLWSN  180
 181 PFFSALFGNTTGTPSLPFSPQSDTENSRTQSEGSSPRANSTSTPPTTDLEKIVPNDDKEG  240
 241 WCRNKKYIEKVDGGFMCTVCRKIYGRYNSVSYHVTIYHRNPPIKCEENGCNFSTREARYI  300
 301 HFHKYYRHHIPLPENIDLGSRKCPFCRHVSKSPAMLEKHIARHETDGTSGGTPGALKRAQ  360
 361 SKKKIVPTMTTDVIDPNVSSIFAPTNPAGNIPIQCSLCPFSTHSTDLLFIHLAMQHAQEL  420
 421 AQCSGLLADNSSETSTSSSSDGEPMITDIDLDVKPLIDQSLMLHLNTPLSN
Interface Residues: 265, 266, 267, 268, 269, 271, 272, 294, 295, 296, 297, 298, 299, 300, 301, 302, 304, 331, 332, 333, 334, 335, 337, 338, 404, 406, 407, 410
3D-footprint Homologues: 1g2f_F, 3uk3_C, 7txc_E, 2gli_A, 6u9q_A, 7ysf_A, 1llm_D, 4x9j_A, 7y3m_I, 2wbs_A, 7n5w_A, 8gn3_A, 5kkq_D
Binding Motifs: M0445_1.02 wTTycsaGaa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.