Transcription Factor

						

			
Accessions: T005316_1.02 (CISBP 1.02)

			
Names: NCU07246, T005316_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:APSES
Length: 833
Pfam Domains:    34-100 KilA-N domain
  269-310 Ankyrin repeats (many copies)
  270-299 Ankyrin repeat
  390-422 Ankyrin repeat
Sequence: 
(in bold interface residues)		   1 MVKENVGGNPEPGIYSATYSGIPVWEYQFGVDLKEHVMRRRHDDWVNATHILKAAGFDKP   60
  61 ARTRILEREVQKDTHEKIQGGYGRYQGTWIPLEQAEALARRNNIYERLKPIFEFQPGNES  120
 121 PPPAPRHASKPKAPKVKPAVPTWGSKSAKNANPPQPGTFLPPGRKGLPAQAPDYNDADTH  180
 181 MHDDDTPDNLTVASASYMAEDDRYDHSHFSTGHRKRKRDELIEDMTEQQHAVYGDELLDY  240
 241 FLLSRNEQPAVRPDPPPNFKPDWPIDNERHTCLHWASAMGDVDVMRQLKKFGASLDAQNV  300
 301 RGETPFMRAVNFTNCFEKQTFPQVMKELFSTIDCRDLSGCTVIHHAAVMKIGRVNSQSCS  360
 361 RYYLDIILNRLQETHHPEFVQQLLDAQDNDGNTAVHLAAMRDARKCIRALLGRGASTDIP  420
 421 NKQGIRAEELIKELNASISKSRSNLPQRSSSPFAPDTQRHDAFHEAISESMVTSRKNSQP  480
 481 NYSSDAANTVQNRITPLVLQKLKDLTATYDSEFKEKDDAEKEARRILNKTQSELKALTAS  540
 541 IDDYNSRLDTDDVAAKTAAEMATARHKVLAFVTHQNRISVQEAVKQELAALDRANAVTNG  600
 601 TSTKSKSSSPSKKPKLSPIPDQKDKPPKDENETESEAEHPDPPAAQAHQQQPGPSSQDTE  660
 661 VEDQDREEEEDDYTHRLSLAAELRSILQEQRSAENDYVEARGMLGTGERIDKYKHLLMSC  720
 721 LPPDEQENLEENLEEMIKLMEQEDESVTDLPAGAVGGGGGGNAADGSGGGGQPSNGRRES  780
 781 VLPALRGGNGDGEMSRRGSRTAAAAAAQVDGEREINGRAGAERTERIQEIAAV
Interface Residues: 59, 60, 79, 82, 86, 268, 279
3D-footprint Homologues: 4ux5_A, 8ipp_B
Binding Motifs: M0089_1.02 aCGcGwy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.