Transcription Factor
| Accessions: | T028059_1.02 (CISBP 1.02) |
| Names: | atf-5, T028059_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:bZIP |
| Length: | 208 |
| Pfam Domains: | 136-190 Basic region leucine zipper 139-195 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MAYVNEQNPQFLLYNGMHNQTHSTPQYHNHHHHHHQSPTYPQSYFNPYSHQSYQQHHLNS 60 61 DVNFQMVPQSTSVPPDPFCSIEPMETNVQAKEQILEEIVRECEEIERRSNSSASPASNWS 120 121 SDEHDSQSEKSYHPYKTPEKKERKKAQNRLAATRYREKKRREKEEAMTCIEGLSVTNGKL 180 181 KDQVSELEREIRYFKKFMTEMGMKTVTD |
| Interface Residues: | 144, 147, 148, 149, 151, 152, 155, 156, 183 |
| 3D-footprint Homologues: | 1gd2_G, 5t01_B, 5vpe_D, 6ppr_A |
| Binding Motifs: | M0342_1.02 ggmTGACGTca |
| Related annotations: | PaperBLAST |
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