Transcription Factor

						

			
Accessions: Q4H3D2 (JASPAR 2024)

			
Names: Q4H3D2_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3D2
Length: 365
Pfam Domains:   237-291 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MNSYMKYPVHASNSNSYTNHITPQGPFPTSHANKPTVLPHETSAYGIYRTVESIRNHNES   60
  61 TVTPQNEGSPGRSSRENSPTGPVGTTVHSTDNSPYAYSPACLNYNTSTPYCNQLVGADLN  120
 121 YVHQSYSINESYPTSNPLYTSTFSNNSLYSQYNPCILGPNVSRDETNDSVINSCGVQDRI  180
 181 SPPNSAYDTPTASPQCTNTLPSNTYDWMKIKRNPPKSIYFSQNKMVEYTYGVTGNNGRTN  240
 241 FTTKQLTELEKEFHFNKYLTRARRVEIAAALRLNETQVKIWFQNRRMKQKKRDKEAEKLN  300
 301 GNKMSQSKSETLHGLKQTSTSSSTNPMYLASSSSNKSTGVTNYNSLMLSHQFQKPAAEAD  360
 361 MNIVT
Interface Residues: 235, 237, 238, 276, 277, 279, 280, 283, 284, 286, 287, 288, 291, 317
3D-footprint Homologues: 5zfz_A, 1puf_A, 3d1n_M, 7q3o_C, 6es3_K, 2ld5_A, 1b72_A, 6a8r_A, 3a01_E, 8osb_E, 1ig7_A, 5jlw_D, 3rkq_B, 2lkx_A, 8eml_B, 4xrs_G, 3cmy_A, 2hdd_A, 8pmf_A, 1jgg_B, 4cyc_A, 2r5y_A, 6m3d_C, 5flv_I, 2hos_A, 9b8u_A, 5zjt_E, 4j19_B, 1puf_B, 8ik5_C, 1fjl_B, 7psx_B, 5hod_A, 3lnq_A, 1nk2_P, 8ejp_B, 7xrc_C, 1e3o_C, 1le8_A, 1au7_A, 2xsd_C, 4qtr_D, 1zq3_P, 1o4x_A, 1du0_A, 8g87_X, 8bx1_A
Binding Motifs: MA1883.1 wwwwwwwTTAATTawwwwww
MA1883.2 TTAATT
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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