Transcription Factor
| Accessions: | T149062_1.02 (CISBP 1.02) |
| Names: | T149062_1.02;, tbx-38 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:T-box |
| Length: | 303 |
| Pfam Domains: | 11-195 T-box |
| Sequence: (in bold interface residues) | 1 MYSCTSPSGIKVSLSTPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYI 60 61 HLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNP 120 121 EIKDQKVILVQSMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILK 180 181 NLKVHHNKFASGFRSNGKRRLSSDSENSENSPPKRSKLVTPPTISPQIDLPQQTPYYFNQ 240 241 NFVAPQNYQPQFASAQNYNFEVQNNAQLAWNMYYQKQYEFWWQQQQMMMPGQPQELKNEF 300 301 QSL |
| Interface Residues: | 37, 172, 173, 189, 192, 193 |
| 3D-footprint Homologues: | 1xbr_B, 6f59_B, 2x6v_A, 4a04_B, 1h6f_B, 5flv_I |
| Binding Motifs: | M1624_1.02 rrrGTGykAa |
| Related annotations: | PaperBLAST |
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