Transcription Factor
Accessions: | T004631_1.02 (CISBP 1.02), Q9LS06 (JASPAR 2024) |
Names: | EDF3, T004631_1.02;, AP2/ERF and B3 domain-containing transcription factor ARF14, Protein AUXIN RESPONSE FACTOR 14, RAV1-like ethylene-responsive transcription factor ARF14, RAVL4_ARATH |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:AP2,B3 |
Length: | 333 |
Pfam Domains: | 60-108 AP2 domain 183-288 B3 DNA binding domain |
Sequence: (in bold interface residues) | 1 MDAMSSVDESSTTTDSIPARKSSSPASLLYRMGSGTSVVLDSENGVEVEVEAESRKLPSS 60 61 RFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKDTTF 120 121 EEEVEFLNAHSKSEIVDMLRKHTYKEELDQRKRNRDGNGKETTAFALASMVVMTGFKTAE 180 181 LLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYS 240 241 YWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIGWKSKSGLDLETGRVMR 300 301 LFGVDISLNAVVVVKETTEVLMSSLRCKKQRVL |
Interface Residues: | 66, 68, 69, 70, 74, 76, 78, 81, 83, 85, 188, 190, 195, 196, 197, 199, 242, 243, 244, 245, 247 |
3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D, 6j9b_A, 6sdg_B, 6fas_B, 6ycq_A, 6j9c_D, 7et6_A |
Binding Motifs: | M0080_1.02 rcaaCAkw M0081_1.02 rCAACAkA UN0397.1 rCAACAkA |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.