Transcription Factor

						

			
Accessions: T134688_1.02 (CISBP 1.02)

			
Names: nhr-66, T134688_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Nuclear receptor
Length: 659
Pfam Domains:   194-264 Zinc finger, C4 type (two domains)
  397-597 Ligand-binding domain of nuclear hormone receptor
Sequence: 
(in bold interface residues)		   1 MTPQIGLTGLGSLTSLPPELLLQFARLDGFNLLPAVGSPAIPSSSSCSEPSTSQASTVVS   60
  61 APTLPPPSPLTSLPQKPAPLMPSGHVTTVDQQNRQQHQQQQRQQQQAQQQNSMARKYSMD  120
 121 TIQHHTMQHPHQLQYIPNHFMTASTDVFAAMDMSQKQSSPPGIFKIVAAKNEPSSSSNSQ  180
 181 PGTPAMGDRRAVPACAICGTDSTGIHFGVDACAACSAFFRRTVVLNKDYSCNKGGKCTVV  240
 241 KDGSAGQKCRACRFRKCISSGMDKNSVQHRRDAIGKYSAGVKRELSPDAEFEPSAKVSTV  300
 301 SEPSTSSGPSGGFNQNVSSPAGIPRVPSTLRTTQASTCMNSACGQKSVLHELICRQNFLT  360
 361 EQRQLFYAGCLGDWFRKPSSIENQTLSELTDFSSCMFHLWKIEPRLAADFMNRNRYLDPL  420
 421 PIVEKLKIYRNFVIMRQSVEEPYLTWRHGGLEKRWFVMPNNTYIDFNNIAKYFENGALKD  480
 481 LKLDYETTTNLFLPSFTHAMDTIGEKMKKNNITETELTILLGLVLLDPGIYGIHESTRKF  540
 541 LKRIRDQLIHDVYMYYEDEMSHLYDPEIRMADIFMLVAAIKIHSIKTSENMHMLRVFDLI  600
 601 PADACFNQMLDVESVNVSPDGQKDSEAEQGPSPVSVPEAARGSYQDDDMPPVLEKNCDL
Interface Residues: 203, 204, 206, 207, 213, 214, 216, 217, 220, 221, 247, 269, 271, 273, 276, 282, 284
3D-footprint Homologues: 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 8hbm_B, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 8cef_H, 4iqr_B, 2han_A, 1hcq_E, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 5emc_A
Binding Motifs: M1479_1.02 awwkTgTAgy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.