Transcription Factor
| Accessions: | D9HNT4 (JASPAR 2024), AuxinResponseFactor7 (EEADannot 2023-12-22) |
| Names: | D9HNT4_MAIZE, ARF7, GRMZM2G475263 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Uniprot: | D9HNT4 |
| Notes: | family:ARF |
| Length: | 686 |
| Pfam Domains: | 119-219 B3 DNA binding domain 245-326 Auxin response factor 559-665 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MAQGAGRDPEELFEELWRACAGPLVELPQTNERVFYFLQGHLEQLQEPTDPALLAEQIKM 60 61 FQVPNKILCKVVNVELKAETETDEMYAQITLQPEPDQVDLPQLPEPPLQETSRPVVHSFC 120 121 KILTPSDTSTHGGFSVLRRHANECLPALDMSMPTPTQELITKDLHGSEWRFKHIYRGQPR 180 181 RHLLTTGWSTFVTSKKLIAGDAFVYLRSETGQQRVGVRRLVQKQSTMPASVISSQSMHLG 240 241 VLASASHAIRTHSIFLVYYRPRLSQSQYIVRLNKYLESSKIGFDVGMRFKMSFEGDDVPI 300 301 KKFSGTVVDKGDLSPQWQGSEWKTLKVKWDEATNLNGPERVSSWEIEPFDASAPAITMPV 360 361 QPSMKNKRPRETAEGLDIHALEPAQEFWLSGRPEQHEKTSVSSSEPKHQVAWTSERAGYS 420 421 AMSSSICQNSAVTGSWFKGFNSSGSHPSLPEISQKLFQVTSNDARVPPWPGLSAYHADEP 480 481 SSKLSCNTALCSYQTEEVAPRFSNAVEEEKKEPGMFRLFGVNLINHARSSATADKTSVGA 540 541 GETSARAAGSFEDSAQLSRVTKDHTHMVNGSPREIQSHQSCSGRSRIKVQMHGNDVCRAV 600 601 DLGNLDGYEQLMGEVGEMFEIKDLGSKEKEEWKVTFINDENETMEVGAVPWQEFCQMVRK 660 661 IVIHSIGDRGHMEACPCLGQDGKRDY |
| Interface Residues: | 126, 131, 132, 133, 135, 176, 178, 179, 181 |
| 3D-footprint Homologues: | 6ycq_A, 7et6_A, 6sdg_B |
| Binding Motifs: | MA1698.1 acwGCCGACrAGgt EEAD0025 yGTCGG MA1698.2 GCCGACrAG |
| Binding Sites: | MA1698.1.2 / MA1698.1.5 MA1698.1.18 MA1698.1.1 MA1698.1.10 MA1698.1.11 MA1698.1.12 / MA1698.1.14 MA1698.1.13 MA1698.1.15 MA1698.1.16 MA1698.1.17 MA1698.1.19 / MA1698.1.5 MA1698.1.2 / MA1698.1.6 MA1698.1.20 / MA1698.1.6 MA1698.1.1 / MA1698.1.3 MA1698.1.4 MA1698.1.3 / MA1698.1.7 MA1698.1.8 MA1698.1.4 / MA1698.1.9 MA1698.1.10 MA1698.1.11 / MA1698.1.16 / MA1698.1.8 MA1698.1.12 / MA1698.1.9 MA1698.1.13 MA1698.1.14 MA1698.1.15 MA1698.1.17 MA1698.1.18 MA1698.1.19 MA1698.1.20 MA1698.1.7 MA1698.2.2 MA1698.2.1 MA1698.2.10 MA1698.2.11 / MA1698.2.12 / MA1698.2.15 / MA1698.2.16 / MA1698.2.17 / MA1698.2.8 / MA1698.2.9 MA1698.2.13 MA1698.2.14 MA1698.2.18 MA1698.2.19 MA1698.2.20 MA1698.2.3 MA1698.2.4 MA1698.2.5 MA1698.2.6 MA1698.2.7 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.