Transcription Factor
| Accessions: | T061913_1.02 (CISBP 1.02) |
| Names: | T061913_1.02;, ZFA4 |
| Organisms: | PBM CONSTRUCTS |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 92 |
| Pfam Domains: | 8-32 Zinc finger, C2H2 type 8-32 C2H2-type zinc finger 24-50 Zinc-finger double domain 38-62 Zinc finger, C2H2 type 40-62 C2H2-type zinc finger 44-62 C2H2-type zinc finger 54-77 Zinc-finger double domain 68-90 C2H2-type zinc finger 68-90 C2H2-type zinc finger 68-90 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 SRPGEKPHICHIQGCGKVYGDRSALARHLRWHTGERPFMCTWSYCGKRFTDRSALARHKR 60 61 THTGEKKFACPECPKRFMRSDHLTQHIKTHTG |
| Interface Residues: | 20, 21, 22, 23, 24, 26, 27, 29, 30, 33, 50, 51, 52, 53, 54, 56, 57, 58, 78, 79, 80, 81, 82, 83, 84, 85, 86 |
| 3D-footprint Homologues: | 1tf3_A, 6jnm_A, 7y3l_A, 6ml4_A, 7n5w_A, 5ei9_F, 1mey_C, 5kl3_A, 7ysf_A, 6wmi_A, 5k5i_A, 2kmk_A, 8ssq_A, 7w1m_H, 5und_A, 2gli_A, 7eyi_G, 1g2f_F, 5k5l_F, 8ssu_A, 1tf6_A, 4x9j_A, 8gn3_A, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 5yel_A, 8h9h_G, 5v3j_F, 6e94_A, 2lt7_A, 2i13_A, 7y3m_I, 6a57_A, 2jpa_A, 3uk3_C, 8cuc_F, 7txc_E, 2drp_D, 1f2i_J, 5yj3_D, 1llm_D, 2wbs_A, 4m9v_C |
| Binding Motifs: | M0563_1.02 TAGGGwws |
| Related annotations: | PaperBLAST |
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