Transcription Factor
| Accessions: | T105327_1.02 (CISBP 1.02) |
| Names: | estExt_fgenesh2_pg.C_80253, T105327_1.02; |
| Organisms: | Branchiostoma floridae |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain,POU |
| Length: | 755 |
| Pfam Domains: | 375-447 Pou domain - N-terminal to homeobox domain 470-526 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MAEAASKDEKQENAGLSDPLMKMAGGDSSDVQKMRDGADSEDDGTTANGSVNGIDFVSQT 60 61 SGLSQQLQDQHALHQSSQQPQPQVLYINPHVHAAQLQQEASQAAAQQTSLNLEVKGEDLE 120 121 QSQQQQETQAQQQQQQHQQQQVQNVSQLHLTQHQQQQLLNQAQLVLQQQVQQGTLLAAIQ 180 181 PQVSQQHPQQPQQQQAVQPQQFLTVQNPQIAVTPQTTTSAIQLTAADLSQLQQLQQQNLN 240 241 LQQYVLFQPGQLGNGQFFLAQPQMPGIQQVQQIAPQVTQTQAQPTTQQTTTAAAQPTIVQ 300 301 TQQGAAILQAPQQQIPQQNILQVAATQGSVSTIGQQVLTLSQAQLPVTTHTQPQIQTIQI 360 361 QKSAVTSSGPSGDEPSQLEELEQFAKMFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 420 421 RFEALNLSFKNMCKLKPLLEKWLQDADSSMANPGALGSPHGSIEVLGRRRKKRTSIETNV 480 481 RVALEKAFIQNPKPTSEEIGIIAEQLGMEKEVVRVWFCNRRQKEKRINPQSSLNQADTIV 540 541 TSPISTNSTVGTTIGSTIASTIGSPIGSTLGSLSPQIGSTIGAVQVGSTIGSPIGSTIGS 600 601 QVVSSVGSPIGSAIGSHVVSSIGSPIGSSISPHVVSTIGSHVGSSIGSHAVSTIGSPLGS 660 661 TIGSHVVSAIAGSQAVSTIDSAVGSQTVSTIGAPVGTTISPASAASTVGSTVSTLGSAIS 720 721 TLGSQVVGIPHTTFTVTQIQQSPPKTQPQTLAQTQ |
| Interface Residues: | 399, 415, 416, 417, 418, 420, 421, 427, 431, 441, 444, 445, 448, 469, 470, 471, 472, 473, 511, 512, 514, 515, 518, 519, 522, 523, 526 |
| 3D-footprint Homologues: | 3l1p_A, 7u0g_M, 3d1n_M, 2xsd_C, 8g87_X, 1e3o_C, 1au7_A, 1o4x_A, 7xrc_C, 5zfz_A, 3a01_E, 1ig7_A, 5zjt_E, 4cyc_A, 1puf_A, 6a8r_A, 2h1k_B, 5jlw_D, 3cmy_A, 1fjl_B, 1jgg_B, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 6m3d_C, 2ld5_A, 7q3o_C, 6es3_K, 7psx_B, 5hod_A, 1puf_B, 2hdd_A, 3rkq_B, 2r5y_A, 1b72_A, 2hos_A, 1le8_A, 2d5v_B, 1le8_B, 1du0_A, 4qtr_D, 1mnm_C, 1k61_B, 4xrs_G, 5flv_I |
| Binding Motifs: | M1245_1.02 kmaTtwrcat |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.