Transcription Factor
| Accessions: | C0PH36 (JASPAR 2024), AuxinResponseFactor25 (EEADannot 2023-12-22) |
| Names: | C0PH36_MAIZE, ARF25, GRMZM2G116557 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Uniprot: | C0PH36 |
| Notes: | family:ARF |
| Length: | 806 |
| Pfam Domains: | 127-228 B3 DNA binding domain 253-334 Auxin response factor 674-783 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MPPAAMALPSQAPSNSGDPLYPELWRACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQV 60 61 AGNPMRLYDLPSKLLCRVLNVELKAETDTDEVYAQIMLMPEPEQNDVAAEKTSSGSAAPP 120 121 RPAVRSFCKTLTASDTSTHGGFSVLRRHADECLPALDMSQSPPTQELVAKDLHGMEWRFR 180 181 HIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVI 240 241 SSQSMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMR 300 301 FEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPASSP 360 361 PVNPLPLSRGKRPRQNAPPPSPESSVLTKEGATKIDTDSAQTPHQNSVLQSQEQMSFRNN 420 421 LTESTDSDSTVQKQMMWSPSPNGKVHTNFQPRPAMDNWMPLGRRETDFKDTRSAFKDART 480 481 ASQSFGDTQGFFMQAYDDSRHRLSFNNQFQDQGSAHRFADPYFYMPQQPSLTVESGTRTQ 540 541 TANNDLRFWSERNSMYGNPSDQQQGFSFGQNTSSWLNQPLPQVEQSRVVRPHATVAPFDL 600 601 EKTREGSGFKIFGFQVDTTNPSPVQLSSPLSAIREHVVQTRPSAPVNELQPVQIECLPEV 660 661 SVSTAGTAAENIQQVQQSSKDIQSKSQGASTRSCTKVHKQGVALGRSVDLSKFTDYGELK 720 721 AELDKMFEFEGELVSANRNWQIVYTDNEGDMMLVGDDPWEEFCNIVRKIYIYTKEEVQKM 780 781 NSKSSVPRKEEPPAAGEGCAAAAANE |
| Interface Residues: | 134, 139, 140, 141, 143, 184, 186, 187, 189 |
| 3D-footprint Homologues: | 7et6_A, 6sdg_B, 6ycq_A |
| Binding Motifs: | MA1690.1 mArcGGGrGACAmkk EEAD0033 GGGrGACA MA1690.2 ArcGGGrGACAm |
| Binding Sites: | MA1690.1.1 MA1690.1.10 MA1690.1.11 / MA1690.1.5 MA1690.1.12 / MA1690.1.6 MA1690.1.13 / MA1690.1.7 MA1690.1.14 MA1690.1.15 / MA1690.1.8 MA1690.1.11 / MA1690.1.16 MA1690.1.17 / MA1690.1.19 MA1690.1.12 / MA1690.1.18 MA1690.1.2 / MA1690.1.4 / MA1690.1.7 MA1690.1.20 MA1690.1.1 / MA1690.1.15 / MA1690.1.3 / MA1690.1.8 MA1690.1.5 MA1690.1.2 / MA1690.1.4 / MA1690.1.6 / MA1690.1.9 MA1690.1.10 MA1690.1.13 / MA1690.1.18 MA1690.1.14 MA1690.1.16 MA1690.1.17 MA1690.1.19 MA1690.1.20 MA1690.1.9 MA1690.2.1 / MA1690.2.15 / MA1690.2.3 MA1690.2.10 MA1690.2.11 MA1690.2.12 MA1690.2.13 / MA1690.2.18 MA1690.2.14 MA1690.2.16 MA1690.2.17 MA1690.2.19 MA1690.2.2 / MA1690.2.4 MA1690.2.20 MA1690.2.5 MA1690.2.6 MA1690.2.7 MA1690.2.8 MA1690.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.