Transcription Factor
| Accessions: | T037182_1.02 (CISBP 1.02) |
| Names: | ham-2, T037182_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 392 |
| Pfam Domains: | 16-39 Zinc finger, C2H2 type 43-66 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MPYRAELKRPDLKGSFPCSICQKVFCHSSSLSRHRMQAHFKSYTCTTCNNEIPSNDTLRS 60 61 HMYRVHNITRMFMCRCCNWAFPDKTSLHIHMQSMLKNGTPGEAAVLAKSSDVVDSTSESG 120 121 SPRQSPPFSPDLLMQKRMLQVAANNNNIGSIFPTLLKSPDSKSMFPLDLSNMGPSQFLSA 180 181 WLANNPINTAALNLAAQQTPSKDSIQSSNISDYDDLEVQTTEEDIKFEVESSDVSPRSVI 240 241 VKTEPTFKRELEHDADIDVEGDDGEPPLKMTIDDKNIHISHDQPSPTVSDSHISGGSSSH 300 301 SGESLKCFDCQVARGKLVAVEDKCRAYEKTIRELQVQVDFLRKIQPNPMPPVMLPPPMMP 360 361 MPSPGPNNLFQNPAMRMLLNNLIHMNRPSVVP |
| Interface Residues: | 3, 5, 6, 9, 16, 26, 27, 28, 29, 30, 32, 33, 34, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 81, 82, 83, 84, 85, 86, 88, 89 |
| 3D-footprint Homologues: | 8gn3_A, 7ysf_A, 2kmk_A, 7n5w_A, 4x9j_A, 2drp_D, 5kl3_A, 5ei9_F, 2jpa_A, 7txc_E, 1llm_D, 5k5i_A, 8ssq_A, 7w1m_H, 1ubd_C, 6u9q_A, 5kkq_D, 8ssu_A, 6blw_A, 8h9h_G, 4m9v_C, 7y3m_I, 6e94_A, 5yel_A, 3uk3_C, 8cuc_F, 7y3l_A, 2wbs_A, 1g2f_F, 6ml4_A, 1f2i_J, 2lt7_A, 5yj3_D |
| Binding Motifs: | M0380_1.02 wdtwAGCmk |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.