Transcription Factor
| Accessions: | At4g35610 (ArabidopsisPBM 20140210), O81793 (JASPAR 2024) |
| Names: | O81793_ARATH, Uncharacterized protein AT4g35610, Uncharacterized protein F8D20.120, Zinc finger (C2H2 type |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | Zn finger (C2H2) |
| Length: | 271 |
| Sequence: (in bold interface residues) | 1 MSNPNPEKTKVDVTEEEKEESDEQWSDEETNMREIVLGLPALNISSRIFGESSSVVEEDA 60 61 EKARLNEQAVLAAGLILAAAEEAVMKGMNEGSGSGGKKKSRPRISTQTDDEGDGLGEGEA 120 121 KKPKKKAKELTHPPKGPPVCHICGRGFGSWKAVFGHMRAHRDRNYQGFLPPPTFSAGAER 180 181 FVIPGLRSAFTIATVGGGSSGGVAVGGRSSGDFSGSGGGDAPGSEGGRGSGIDLNVEPVE 240 241 QVEEATESGCIAKFDLNKSPPKDEEEEDKPK |
| Interface Residues: | 120, 121, 123, 124, 126, 127, 128, 129, 148, 149, 150, 151, 152, 153, 155, 156, 159 |
| 3D-footprint Homologues: | 5ei9_F, 2kmk_A, 7n5w_A, 8h9h_G, 1f2i_J, 7w1m_H, 6ml4_A, 7y3l_A, 8cuc_F, 4x9j_A, 7txc_E, 1g2f_F, 1llm_D |
| Binding Motifs: | At4g35610 rkCAGCTGmm MA1801.1 agttAGCTrwk MA1801.2 AGCTr |
| Publications: | Wang L, Ko EE, Tran J, Qiao H. TREE1-EIN3-mediated transcriptional repression inhibits shoot growth in response to ethylene. Proc Natl Acad Sci U S A 117:29178-29189 (2020). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.