Transcription Factor
| Accessions: | T015232_1.02 (CISBP 1.02) |
| Names: | Arntl, T015232_1.02; |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 613 |
| Pfam Domains: | 61-112 Helix-loop-helix DNA-binding domain 136-239 PAS fold 334-422 PAS fold 338-423 PAS fold |
| Sequence: (in bold interface residues) | 1 MADQRMDISSTISDFMSPGPTDLLSGSLGTSGVDCNRKRKGSATDYQLEYAEHQGRIKNA 60 61 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT 120 121 EANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLF 180 181 DYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKC 240 241 NRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSC 300 301 LVAIGRLHSHMVPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC 360 361 YEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEY 420 421 IVSTNTVVLANVLEGGDPTFPQLTAPPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAG 480 481 KIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSTGL 540 541 LPGQAQETPGYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGL 600 601 GGPVDFSDLPWPL |
| Interface Residues: | 61, 63, 64, 65, 67, 68, 71, 72, 76, 96, 98 |
| 3D-footprint Homologues: | 1a0a_B, 1an4_A, 4zpk_A, 8hov_A, 7d8t_A, 5gnj_I, 7xi3_A, 5v0l_A, 8ia3_B, 7f2f_B, 4h10_A, 8osl_O, 7ssa_L, 5nj8_D, 4h10_B, 7xq5_A, 6g1l_A, 5eyo_A, 1am9_A, 8osl_P, 5nj8_C, 4zpk_B, 7xi3_B, 4zpr_B, 7xhv_B, 5sy7_B, 5v0l_B |
| Binding Motifs: | M0220_1.02 dgTCACGTGh |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.