Transcription Factor
| Accessions: | T20330 (AthalianaCistrome v4_May2016) |
| Names: | AT4G32730, MYB3R1, T20330; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 995 |
| Pfam Domains: | 35-81 Myb-like DNA-binding domain 38-96 Myb-like DNA-binding domain 87-133 Myb-like DNA-binding domain 90-147 Myb-like DNA-binding domain 139-181 Myb-like DNA-binding domain 142-187 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MKREMKAPTTPLESLQGDLKGKQGRTSGPARRSTKGQWTPEEDEVLCKAVERFQGKNWKK 60 61 IAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGR 120 121 IGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHW 180 181 NSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMHSNGDEGSSRPGVDAEESEC 240 241 SQASTVFSQSTNDLQDEVQRGNEEYYMPEFHSGTEQQISNAASHAEPYYPSFKDVKIVVP 300 301 EISCETECSKKFQNLNCSHELRTTTATEDQLPGVSNDAKQDRGLELLTHNMDNGGKNQAL 360 361 QQDFQSSVRLSDQPFLSNSDTDPEAQTLITDEECCRVLFPDNMKDSSTSSGEQGRNMVDP 420 421 QNGKGSLCSQAAETHAHETGKVPALPWHPSSSEGLAGHNCVPLLDSDLKDSLLPRNDSNA 480 481 PIQGCRLFGATELECKTDTNDGFIDTYGHVTSHGNDDNGGFPEQQGLSYIPKDSLKLVPL 540 541 NSFSSPSRVNKIYFPIDDKPAEKDKGALCYEPPRFPSADIPFFSCDLVPSNSDLRQEYSP 600 601 FGIRQLMISSMNCTTPLRLWDSPCHDRSPDVMLNDTAKSFSGAPSILKKRHRDLLSPVLD 660 661 RRKDKKLKRAATSSLANDFSRLDVMLDEGDDCMTSRPSESPEDKNICASPSIARDNRNCA 720 721 SARLYQEMIPIDEEPKETLESGGVTSMQNENGCNDGGASAKNDQETSGSFFELRLCSPGM 780 781 TRARPDNKVNASAKDLSNQHKISLGDFPTEEMSSEPLCTVDSIPLSAIDKTNTAETSFDI 840 841 ENFNIFDGTPFRKLLDTPSPWKSPLLFGSFLQSPKLPPEITFEDIGCFMSPGERSYDAIG 900 901 LMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKENQHQPHDQLGNRSQVECR 960 961 ALDFSDCGTPGKAKVPSASPGGYSSPSSYLLKSCR |
| Interface Residues: | 35, 70, 71, 74, 75, 78, 79, 87, 121, 122, 123, 124, 126, 127, 130, 131, 132, 173, 174, 177, 178, 181, 182, 183 |
| 3D-footprint Homologues: | 7c4r_A, 1w0t_A, 5eyb_B, 7xur_A, 1vfc_A, 3osg_A, 2kdz_A, 3zqc_A, 6kks_A, 1mse_C |
| Binding Motifs: | M0505 wwwwwTdACCGTTrr M0503 wwwaTrACCGTTr |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.