Transcription Factor
| Accessions: | T02186 (AthalianaCistrome v4_May2016), Q9XIC5 (JASPAR 2024) |
| Names: | ANAC017, AT1G34190, T02186;, NAC domain-containing protein 17, NAC17_ARATH, Protein NTM1-like 7, Protein REGULATORS OF AOX1A 2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 557 |
| Pfam Domains: | 17-143 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MADSSPDSCFKGGKFSAPGFRFHPTDEELVMYYLKRKICRKRLRVNVIGVVDVYKMDPEE 60 61 LPGQSMLKTGDRQWFYFTPRSRKYPNAARSNRGTENGYWKATGKDRVIEYNSRSVGLKKT 120 121 LVFYRGRAPSGERTDWVMHEYTMDEDELGRCKNPQEYYALYKLFKKSGAGPKNGEQYGAP 180 181 FQEEEWVDDDNEDVNAIAVAVPEQPVVRYEDARRVDERRLFNPVILQLEDIDELLNGIPN 240 241 APGVPQRCIPQVNSEEELQSTLVNNSAREFLPNGQQYNRPSSFDSLETAEVTSAPLVFEK 300 301 EDFIEMDDLLLIPEFGASSTEKAAQFSNHGEFDDFNEFDQLFHDVSMSLDMEPIDQGTSA 360 361 NLSSLSDSANYTSDQKQQLLYQQFQDQTPENQLNNIMDPSTTLNQITSDIWFEDDQAILF 420 421 DQQQSFSGAFASPSSGVMPDSTNPTMSVNAQGHEIQNGGGTTSQFSSALWALMDSIPSTP 480 481 ASACEGPLNRTFVRMSSFSRMRFNGKANGTPVSTTIAKKGIRNRGFLLLSIVGALCAIFW 540 541 VLVATVRVSGRSLLLKD |
| Interface Residues: | 63, 73, 84, 89, 91, 100, 102, 104, 124, 128, 129, 130, 133 |
| 3D-footprint Homologues: | 6ceu_B, 7xp3_B, 3swp_A |
| Binding Motifs: | M0639 TtaCkTGgrgmrCAmGg M0687 adkTTwCTTGbwsmaCAmG MA1674.1 wdgTTwCTTGttsmaCAAGwAAhh MA1674.2 awgCAAGTAAhh MA1674.3 CAAGTAA |
| Binding Sites: | MA1674.1.1 MA1674.1.5 MA1674.1.6 MA1674.1.7 MA1674.1.8 MA1674.1.2 MA1674.1.3 MA1674.1.4 MA1674.1.10 MA1674.1.11 MA1674.1.12 MA1674.1.13 MA1674.1.14 MA1674.1.15 MA1674.1.16 MA1674.1.17 MA1674.1.18 MA1674.1.19 MA1674.1.20 MA1674.1.9 MA1674.2.1 MA1674.2.10 MA1674.2.11 MA1674.2.12 MA1674.2.13 MA1674.2.14 MA1674.2.15 MA1674.2.16 MA1674.2.17 MA1674.2.18 MA1674.2.19 MA1674.2.2 MA1674.2.20 MA1674.2.3 MA1674.2.4 MA1674.2.5 MA1674.2.6 MA1674.2.7 MA1674.2.8 MA1674.2.9 MA1674.3.9 MA1674.3.18 MA1674.3.1 / MA1674.3.5 / MA1674.3.8 MA1674.3.10 / MA1674.3.12 / MA1674.3.14 / MA1674.3.19 / MA1674.3.3 / MA1674.3.6 MA1674.3.11 / MA1674.3.13 MA1674.3.17 / MA1674.3.2 / MA1674.3.20 MA1674.3.4 MA1674.3.15 / MA1674.3.7 MA1674.3.16 |
| Publications: | Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E. A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell 25:3450-71 (2013). [Pubmed] |
| Related annotations: | PaperBLAST |
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