Transcription Factor
| Accessions: | T104707_1.02 (CISBP 1.02) |
| Names: | amel4_ncbi_hmm42917, T104707_1.02; |
| Organisms: | Apis mellifera |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain,POU |
| Length: | 532 |
| Pfam Domains: | 303-376 Pou domain - N-terminal to homeobox domain 399-455 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MVFLEDPRMIFADMRLHATSTPTSTPTRYHHRKYRPQNNNDYADLHGEVDGPELSGDDRS 60 61 ITSDIQDATEANLDHDSMDSDREALNLVTDVSHRNSSSGTSGSASSPSSGVSSQITGSHQ 120 121 QQQHTAGQQNSSNSQAALAAQLVSQQLLMHGSLGALGPQEIQALASTFQQQQQSLQQQLQ 180 181 QLAMFQQANSAAAGQLPAQAQFFLQNQGLLQSGGYSSRSSHPRSQSVQVRQTIKKEKKSN 240 241 ERSKILELVQAAQQLQALQKQQAVQGSGGLVGRSLTQQRSPPPPGTPPAVKQPPPRLEPS 300 301 PEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 360 361 MCKLKPLLQKWLEDADNSLNNPGSLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFVQN 420 421 PKPTSEEITVLADSLAMEKEVVRVWFCNRRQKEKRINPPTAAMGSPTMASPAPSVFASLA 480 481 SSMSGSPLALTTHSSGMGHSHPHPTPLGSPLPLALVASAGGNYHPLSGKSHE |
| Interface Residues: | 328, 344, 345, 346, 347, 349, 350, 356, 360, 399, 400, 401, 402, 440, 441, 443, 444, 447, 448, 451, 452, 455 |
| 3D-footprint Homologues: | 3d1n_M, 3l1p_A, 7u0g_M, 8g87_X, 2xsd_C, 1e3o_C, 1au7_A, 1o4x_A, 7xrc_C, 1puf_A, 1ig7_A, 4cyc_A, 6a8r_A, 1fjl_B, 3cmy_A, 2h1k_B, 5zfz_A, 1jgg_B, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1puf_B, 7q3o_C, 2ld5_A, 6es3_K, 2r5y_A, 7psx_B, 2hdd_A, 5zjt_E, 5hod_A, 3a01_E, 4xrs_G, 1b72_A, 3rkq_B, 5jlw_D, 1le8_A, 5flv_I, 1mnm_C, 1du0_A, 4qtr_D, 1k61_B |
| Binding Motifs: | M1227_1.02 hTAwTwAtrc |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.