Transcription Factor
| Accessions: | Q9C519 (JASPAR 2024), T04782 (AthalianaCistrome v4_May2016) |
| Names: | AtWRKY6, WRKY DNA-binding protein 6, WRKY transcription factor 6, WRKY6_ARATH, AT1G62300, T04782;, WRKY6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY |
| Length: | 553 |
| Pfam Domains: | 312-370 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MDRGWSGLTLDSSSLDLLNPNRISHKNHRRFSNPLAMSRIDEEDDQKTRISTNGSEFRFP 60 61 VSLSGIRDREDEDFSSGVAGDNDREVPGEVDFFSDKKSRVCREDDEGFRVKKEEQDDRTD 120 121 VNTGLNLRTTGNTKSDESMIDDGESSEMEDKRAKNELVKLQDELKKMTMDNQKLRELLTQ 180 181 VSNSYTSLQMHLVSLMQQQQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNS 240 241 SSEDRTRSGGSSAAERRSNGKRLGREESPETESNKIQKVNSTTPTTFDQTAEATMRKARV 300 301 SVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILI 360 361 TTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMAT 420 421 ISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPH 480 481 VIGQALYNQSKFSGLQFSGGSPSTAAFSQSHAVADTITALTADPNFTAALAAVISSMING 540 541 TNHHDGEGNNKNQ |
| Interface Residues: | 318, 319, 320, 322, 323, 334 |
| 3D-footprint Homologues: | 6j4g_B, 6ir8_A, 6j4e_B, 6j4f_F, 7z0u_A |
| Binding Motifs: | M0840 / MA1300.1 CGTTGACYwwkkywdwyhh M0816 rkcGTTGACywtktt MA1300.2 CGTTGACY |
| Binding Sites: | MA1300.1.1 MA1300.1.10 MA1300.1.11 MA1300.1.12 MA1300.1.13 MA1300.1.14 MA1300.1.15 MA1300.1.16 MA1300.1.17 MA1300.1.18 MA1300.1.19 MA1300.1.2 MA1300.1.20 MA1300.1.3 MA1300.1.4 MA1300.1.5 MA1300.1.6 MA1300.1.7 MA1300.1.8 MA1300.1.9 MA1300.2.15 MA1300.2.1 MA1300.2.10 MA1300.2.11 / MA1300.2.17 MA1300.2.12 MA1300.2.13 MA1300.2.14 MA1300.2.16 MA1300.2.18 MA1300.2.19 MA1300.2.2 MA1300.2.20 / MA1300.2.4 MA1300.2.3 MA1300.2.5 MA1300.2.6 MA1300.2.7 MA1300.2.8 MA1300.2.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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