Transcription Factor

						

			
Accessions: T049436_1.02 (CISBP 1.02)

			
Names: T049436_1.02;, Zscan20
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 601
Pfam Domains:    48-132 Myb/SANT-like DNA-binding domain
  302-318 Zinc finger, C2H2 type
  310-334 Zinc-finger double domain
  324-346 Zinc finger, C2H2 type
  324-346 C2H2-type zinc finger
  324-346 C2H2-type zinc finger
  338-362 Zinc-finger double domain
  351-375 C2H2-type zinc finger
  352-374 Zinc finger, C2H2 type
  352-374 C2H2-type zinc finger
  433-455 Zinc finger, C2H2 type
  433-455 C2H2-type zinc finger
  433-453 C2H2-type zinc finger
  447-471 Zinc-finger double domain
  460-483 C2H2-type zinc finger
  461-483 Zinc finger, C2H2 type
  461-483 C2H2-type zinc finger
  476-499 Zinc-finger double domain
  488-511 C2H2-type zinc finger
  489-511 Zinc finger, C2H2 type
  489-511 C2H2-type zinc finger
  506-526 Zinc-finger double domain
  516-537 C2H2-type zinc finger
  517-539 Zinc finger, C2H2 type
  517-539 C2H2-type zinc finger
  531-555 Zinc-finger double domain
  545-567 Zinc finger, C2H2 type
  545-567 C2H2-type zinc finger
  561-584 Zinc-finger double domain
  572-595 C2H2-type zinc finger
  573-595 Zinc finger, C2H2 type
  573-595 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MDDQDEGSWEPEETVEDCSGSGLAAEESLQGPRIAGGPALLQSRIAGVHWGFEETKVFLA   60
  61 ILSESPFAEKLRTCHQNSQIYRAIAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSCPP  120
 121 GTCPFYEEMDSLMRARTVIRAVEMVGEATGLPGSGQSSTEADDQEAWGEMEDEDAVRLLT  180
 181 PDSQPADAGFELKREEEDQISEQDVLGDLPGALSRYTTKAVCQPCDWGEDHVNGNEGEWR  240
 241 NTWEECSSEEDLEKLIDHQGLYLTEKPYGCDTRAKSFSRKVHFFAPQRTHSSEKPYKCLG  300
 301 SGKSFSDRANLSTHQRIHIGEKPYRCLECGKSFNDPSNLITHQRTHTGEKPYKCGLCWKS  360
 361 FNQSSNLLKHQRVHLGGPPNQRDEPGENFGQSLSYSAHWRRNSTQEGPKEPQNISMGADS  420
 421 PGACHPNSGEKLYSCPECGRCFSKSSALTSHQRIHSGEKPYECAVCGKSFSKSSSLANHR  480
 481 RTHTGEKPHKCADCGKCFSERSKLITHQRVHTGEKPYECPECGKFFRDRSNLITHQRIHT  540
 541 GEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKA  600
 601 L
Interface Residues: 307, 309, 310, 313, 317, 334, 335, 336, 337, 338, 340, 341, 348, 349, 363, 364, 365, 366, 369, 373, 391, 392, 393, 394, 406, 408, 409, 412, 433, 443, 444, 445, 446, 447, 450, 471, 472, 473, 474, 475, 477, 478, 479, 480, 481, 484, 499, 500, 501, 502, 503, 504, 506, 507, 512, 526, 527, 528, 529, 530, 531, 533, 534, 537, 538, 555, 556, 557, 558, 559, 560, 561, 562, 583, 584, 585, 586, 587, 589, 590, 594
3D-footprint Homologues: 8ssq_A, 7w1m_H, 8ssu_A, 2drp_D, 1yuj_A, 5v3j_F, 2kmk_A, 8cuc_F, 7n5w_A, 1llm_D, 1f2i_J, 4x9j_A, 2gli_A, 8h9h_G, 5yel_A, 5kl3_A, 5k5i_A, 6ml4_A, 1tf6_A, 5kkq_D, 2wbs_A, 4m9v_C, 7ysf_A, 6e94_A, 2jpa_A, 1ubd_C, 1tf3_A, 5ei9_F, 7txc_E, 6jnm_A, 3uk3_C, 6blw_A, 5k5l_F, 6u9q_A, 1g2f_F, 8gn3_A, 2lt7_A, 6a57_A, 7y3l_A, 7y3m_I, 5yj3_D
Binding Motifs: M0440_1.02 gtrtagac
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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