Transcription Factor
| Accessions: | C0HEC8 (JASPAR 2024) |
| Names: | C0HEC8_MAIZE, TCP transcription factor, Transcription factor TCP5 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | C0HEC8 |
| Length: | 298 |
| Pfam Domains: | 60-129 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MISGNLNNEELGGGGCTKAEGPGAAGGAGAVVAKSPVLSSSRHWPPSTESRIVRVSRVFG 60 61 GKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAAQDEIDKLP 120 121 PLQFPPQGQDLVAHLPPSMVAPFANVAADRAAAAAAAANASAAMAEGGKRHCHGGIKGLM 180 181 GMGLNNSIGLANATMPLAHGLYYTPGESWTNGGNAAVHDHQVSHGGTSPQTVAHHSPFSS 240 241 LLSLAAPGPQLVFYSPEGGGFAMKEATDHQFAVDSLDHSQGQLSLSSARSFLHPGNQG |
| Interface Residues: | 63, 64, 65, 78, 80 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D |
| Binding Motifs: | MA1828.1 ssGTGGTCCass MA1828.2 GTGGTCCa |
| Binding Sites: | MA1828.2.11 MA1828.1.1 MA1828.1.10 MA1828.1.11 MA1828.1.11 / MA1828.1.12 MA1828.1.12 / MA1828.1.13 MA1828.1.14 MA1828.1.15 / MA1828.1.16 MA1828.1.16 MA1828.1.17 MA1828.1.18 MA1828.1.19 / MA1828.1.20 MA1828.1.1 / MA1828.1.2 MA1828.1.20 MA1828.1.3 / MA1828.1.4 MA1828.1.4 / MA1828.1.5 MA1828.1.5 / MA1828.1.6 MA1828.1.6 MA1828.1.7 MA1828.1.8 MA1828.1.9 MA1828.1.13 MA1828.1.15 MA1828.1.19 MA1828.1.2 MA1828.1.3 MA1828.2.1 MA1828.2.10 / MA1828.2.15 / MA1828.2.19 / MA1828.2.7 MA1828.2.12 / MA1828.2.5 MA1828.2.13 / MA1828.2.20 / MA1828.2.8 MA1828.2.14 / MA1828.2.9 MA1828.2.16 MA1828.2.17 / MA1828.2.3 MA1828.2.18 MA1828.2.2 / MA1828.2.4 MA1828.2.6 |
| Publications: | Schommer C, Palatnik JF, Aggarwal P, Chételat A, Cubas P, Farmer EE, Nath U, Weigel D. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol : (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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