Transcription Factor
| Accessions: | A4FVP6 (JASPAR 2024) |
| Names: | ANAC016, NAC domain-containing protein 16, NAC16_ARATH, Protein NTM1-like 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | A4FVP6 |
| Length: | 564 |
| Pfam Domains: | 17-143 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MVDSSRDSCFKAGKFSAPGFRFHPTDEELVVYYLKRKICCKKLRVNAIGVVDVYKVDPSE 60 61 LPGLSMLKTGDRQWFFFTPRNRKYPNAARSSRGTATGYWKATGKDRVIEYNSRSVGLKKT 120 121 LVFYRGRAPNGERTDWVMHEYTMDEEELGRCKNAKEYYALYKLYKKSGAGPKNGEQYGAP 180 181 FQEEEWVDSDSEDADSVAVPDYPVVRYENGPCVDDTKFCNPVKLQLEDIEKLLNEIPDAP 240 241 GVNQRQFDEFVGVPQGNSAEVIQSTLLNNSSGEYIDPRTNGMFLPNGQLYNRDSSFQSHL 300 301 NSFEATSGMAPLLDNEKEEYIEMNDLLIPELGASSTEKSTEFLNHGEFGDVNEYDQLFND 360 361 ISVFQGTSTDLSCLSNFTNNTSGQRQQLLYEQFQYQTPENQLNNYMHPSTTLNQFTDNMW 420 421 FKDDQAALYVQPPQSSSGAFTSQSTGVMPESMNPTMSVNPQYKEGQNGGGTRSQFSSALW 480 481 ELLESIPSTPASACEGPLNQTFVRMSSFSRIRFNGTSVTSRKVTVAKKRISNRGFLLLSI 540 541 MGALCAIFWVFKATVGVMGRPLLS |
| Interface Residues: | 84, 86, 89, 100, 102, 104, 124, 128, 129, 130, 133 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | MA2005.1 hrCAAGCAAtw MA2005.2 tvCkTGtkcysCAmG |
| Binding Sites: | MA2005.1.1 MA2005.1.10 MA2005.1.11 MA2005.1.12 MA2005.1.13 MA2005.1.15 MA2005.1.17 MA2005.1.18 MA2005.1.20 MA2005.1.2 MA2005.1.3 MA2005.1.4 MA2005.1.6 MA2005.1.7 MA2005.1.8 MA2005.1.9 MA2005.1.14 MA2005.1.16 MA2005.1.19 MA2005.1.5 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.