Transcription Factor

						

			
Accessions: T090233_1.02 (CISBP 1.02)

			
Names: HAT3, T090233_1.02;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 315
Pfam Domains:     1-118 HD-ZIP protein N terminus
  161-215 Homeobox domain
  217-261 Homeobox associated leucine zipper
Sequence: 
(in bold interface residues)		   1 MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWI   60
  61 NMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELM  120
 121 AAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKE  180
 181 HSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRL  240
 241 QKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSP  300
 301 WAAMPLRQRPAAGSH
Interface Residues: 160, 161, 162, 163, 165, 201, 202, 204, 205, 208, 209, 212, 213, 215, 216
3D-footprint Homologues: 2h1k_B, 1puf_A, 5zfz_A, 1zq3_P, 3lnq_A, 1jgg_B, 2lkx_A, 1nk2_P, 2ld5_A, 3d1n_M, 1b72_A, 5zjt_E, 7psx_B, 6a8r_A, 3a01_E, 3rkq_B, 3cmy_A, 2r5y_A, 1puf_B, 1fjl_B, 5flv_I, 5jlw_D, 2xsd_C, 1ig7_A, 7q3o_C, 1e3o_C, 1le8_A, 7xrc_C, 1au7_A, 4qtr_D, 5hod_A, 1o4x_A, 1du0_A, 4xrm_B, 6es3_K, 4xrs_G, 2hdd_A, 4cyc_A, 8g87_X, 2hos_A, 6m3d_C
Binding Motifs: M0848_1.02 syAATCAw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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