Transcription Factor

						

			
Accessions: REL_MOUSE (HOCOMOCO 10)

			
Names: REL_MOUSE
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Length: 587
Pfam Domains:    10-178 Rel homology domain (RHD)
Sequence: 
(in bold interface residues)		   1 MASSGYNPYVEIIEQPRQRGMRFRYKCEGRSAGSIPGERSTDNNRTYPSVQIMNYYGKGK   60
  61 IRITLVTKNDPYKPHPHDLVGKDCRDGYYEAEFGPERRPLFFQNLGIRCVKKKEVKGAII  120
 121 LRISAGINPFNVGEQQLLDIEDCDLNVVRCVFMFFLPDEDGNFTTALPPIVSNPIYDNRA  180
 181 PNTAELRICRVNKNCGSVRGGDEIFLLCDKVQKDDIEVRFVLNDWEARGVFSQADVHRQV  240
 241 AIVFKTPPYCKAILEPVTVKMQLRRPSDQEVSESMDFRYLPDEKDAYGNKSKKQKTTLIF  300
 301 QKLLQDCGHFTEKPRTAPLGSTGEGRFIKKESNLFSHGTVLPEMPRSSGVPGQAEPYYSS  360
 361 CGSISSGLPHHPPAIPSVAHQPTSWPPVTHPTSHPVSTNTLSTFSAGTLSSNSQGILPFL  420
 421 EGPGVSDLSASNSCLYNPDDLARMETPSMSPTDLYSISDVNMLSTRPLSVMAPSTDGMGD  480
 481 TDNPRLVSINLENPSCNARLGPRDLRQLHQMSPASLSAGTSSSSVFVSQSDAFDRSNFSC  540
 541 VDNGLMNEPGLSDDANNPTFVQSSHYSVNTLQSEQLSDPFTYGFFKI
Interface Residues: 22, 24, 25, 27, 28, 30, 31, 32, 179, 181, 210, 238
3D-footprint Homologues: 1gji_A, 7cli_B, 1nfk_A, 2o61_A, 1a3q_A, 2ram_A
Binding Motifs: REL_MOUSE.H10MO.C|M01320 dkGGrmwTTCCm
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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