Transcription Factor
| Accessions: | A9Z1E8 (JASPAR 2024), T00324 (AthalianaCistrome v4_May2016) |
| Names: | A9Z1E8_ARATH, AT1G70920, ATHB18, T00324; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Homeobox |
| Length: | 206 |
| Pfam Domains: | 67-122 Homeobox domain 124-167 Homeobox associated leucine zipper |
| Sequence: (in bold interface residues) | 1 MALSPNSSSLDLTISIPSFSPSPSLGDHHGMRDFDINQTPKTEEDREWMIGATPHVNEDD 60 61 SNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRAR 120 121 SKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTMCPRCERVTDAVDN 180 181 DSNAVQEGAVLSSRSRMTISSSSSLC |
| Interface Residues: | 67, 68, 69, 70, 71, 72, 108, 109, 111, 112, 115, 116, 119, 120, 121, 122, 123, 145 |
| 3D-footprint Homologues: | 1fjl_B, 5zfz_A, 2h1k_B, 1puf_A, 6a8r_A, 3cmy_A, 3d1n_M, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 2ld5_A, 1mnm_C, 7psx_B, 5flv_I, 3l1p_A, 5hod_A, 3rkq_B, 1puf_B, 7q3o_C, 1le8_B, 1k61_B, 5jlw_D, 2xsd_C, 1le8_A, 1ig7_A, 6ryd_F, 7xrc_C, 1e3o_C, 1au7_A, 4cyc_A, 1b72_A, 1o4x_A, 5zjt_E, 4qtr_D, 3a01_E, 1du0_A, 1jgg_B, 4xrm_B, 2hdd_A, 6wig_A, 2r5y_A, 8g87_X, 6es3_K, 4xrs_G, 2hos_A, 6m3d_C |
| Binding Motifs: | M0438 / MA1211.1 yyAATyATTrk M0433 myAATGATTrr MA1211.2 yAATyATTr |
| Binding Sites: | MA1211.1.1 MA1211.1.2 / MA1211.1.4 MA1211.1.3 MA1211.1.10 MA1211.1.11 MA1211.1.12 MA1211.1.13 MA1211.1.14 MA1211.1.15 MA1211.1.16 MA1211.1.17 MA1211.1.18 MA1211.1.19 MA1211.1.20 MA1211.1.5 MA1211.1.6 MA1211.1.7 MA1211.1.8 MA1211.1.9 MA1211.2.1 MA1211.2.10 MA1211.2.11 MA1211.2.12 MA1211.2.13 MA1211.2.14 MA1211.2.15 MA1211.2.16 MA1211.2.17 MA1211.2.18 MA1211.2.19 MA1211.2.2 / MA1211.2.4 MA1211.2.20 MA1211.2.3 MA1211.2.5 MA1211.2.6 MA1211.2.7 MA1211.2.8 MA1211.2.9 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
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