Transcription Factor
| Accessions: | T097575_1.02 (CISBP 1.02) |
| Names: | T097575_1.02;, ZFHX4 |
| Organisms: | Tetraodon nigroviridis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 1509 |
| Pfam Domains: | 69-91 C2H2-type zinc finger 98-120 C2H2-type zinc finger 239-261 C2H2-type zinc finger 865-921 Homeobox domain 985-1041 Homeobox domain 1398-1454 Homeobox domain 1474-1496 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 VDSAENTEAEVTAPKDVTALLTPPLEDISTQPSNGKLAPRSLTQIPPSSPPASPPSDHPP 60 61 LSDHHGYRFRCSRCSLAFPTQEKLQLHWQYHAMRAATECPLCSRQCRSQEALQRHMQNTH 120 121 SQLDNTQGQNTLLPPHTAQYAEHNQSSVQQDFSLSPQVGQEAGESEDEEMEEEVLDMEEK 180 181 EQKGIQGEEKDVVDDGAKEHSGEQGKGPQEDIPEPTFSSPVKKSSNPAMDRFLDPARPYK 240 241 CTVCSESFTQKTILLVHYNSVSHLHRARRALQDSSTGVAVAEAPRGPDSRPYRCQLCGVG 300 301 YSQSSTLDIHXQTTLLQSQVLQHFPLGQENLLKQPFSLIPESMLSLQQQLLLPFYFSGDM 360 361 KMNPELAFKSHELSQLLSAMSIPKEQLKAETESEPQPQTDEKTSQEAGSTSAVSEPKDHV 420 421 PSEPRAEAGTSELSKMVQEESSPSLEGKEEVSVPANQTESQKEAKNPSVNLGLQCPPPRV 480 481 PFAAVNGEPLKALLQSYGYELALQYIQNRHRNQQEISSHLGNNSAHKHETAHIDKAEMSS 540 541 EEGKDDFTESKDGEMGGCMSNEDTEEKRQTRCKEWLNRRKECCERGKKCMDCGKLFSDAL 600 601 VLKSHKEYIHRTLFPTAALERFSREYRQQYDQMYPLTEHRAGDNSASSPQATASTSEPEP 660 661 AREVVTPPVKPHAASPVASVSDPINKTRTSSTTTSAPTSSPPCQTSPQQEVSTLAASTDT 720 721 SPTTTPAQSIPVTLPKIPMLPLPLSQLPIPPLTLPKLPLPALPFPMELPLLPPVVMPSVA 780 781 LQPQPWLDSSVNPELAKLYQSQFNPALLGKQPQLSPALLTQQSQLSPALQTQPPQLSPVL 840 841 LGQSSQTSPTQTGQTQVNATLQQSKRTRTRISEEQLTILRKHFDINSLPSDDEINKMSAL 900 901 SGLPHKVIKHWFRNTLFKERQRDKDSPYNFNNPPTIALEETSEEVAQDQSLALSPCSLSP 960 961 GLPANSSPLSQASDLQRGEPHRGRRSSRTRFTEKQLETLQGVFEATPYPREEEYDRLSAL 1020 1021 LSLPNRVIVVWFQNARQRARKNQDKGADDGSESKSSHRQSLKDNDDEDVGCGHEGLSEAH 1080 1081 NENSLDLTYEYYTNPESPVGSSSSAIAEGEHPTVKDELAPVTRKQEDTKVPPLANKSPGH 1140 1141 VRIQNETTDAGTHHVQDVQAVKTEPSSPPEPSKEEASSSEMPQPCSSSSSQKPAPNGLSV 1200 1201 SHSSQGHNSPPDQAGKKPADTSASILASPDSETHRSQPPDAAPGASVETQPKKAFQPQSQ 1260 1261 AQFQCSLCPASLPTFQLWQEHHTRHVLAAQTQVQFLHSGFTERTLPYMMLHPNHPLVASQ 1320 1321 MLSGAMSQMHPSSSHSMISHLNSIQMKNTMSDHSNPPLTCLAQGSMTPIKQNPKLSSDNG 1380 1381 FDVQRGSRDVEEEHRRDKRQRTTITPEQLEVLYQRYSIDSNPTRGVLESIARDVGLTRRV 1440 1441 VQVWFQNTRARERKGQFRSTGPGSCFSLGFNHLRCPFCRALFKVKSALDAHMRSRHWAEA 1500 1501 ERAGYALSM |
| Interface Residues: | 79, 80, 81, 82, 83, 84, 86, 107, 108, 109, 110, 111, 114, 144, 146, 150, 151, 152, 183, 185, 186, 189, 209, 210, 212, 231, 234, 237, 249, 250, 251, 252, 253, 256, 272, 273, 274, 275, 276, 278, 282, 283, 285, 302, 303, 304, 305, 306, 308, 309, 310, 866, 868, 910, 913, 914, 984, 985, 986, 987, 988, 1026, 1027, 1029, 1030, 1033, 1034, 1037, 1038, 1041, 1342, 1347, 1348, 1349, 1351, 1352, 1367, 1398, 1399, 1400, 1401, 1427, 1437, 1438, 1439, 1441, 1442, 1443, 1446, 1447, 1449, 1450, 1451, 1454 |
| 3D-footprint Homologues: | 7y3l_A, 8cuc_F, 8gn3_A, 6u9q_A, 8ssq_A, 7w1m_H, 5yel_A, 8ssu_A, 2wbs_A, 1llm_D, 5kkq_D, 2lt7_A, 7y3m_I, 6e94_A, 5v3j_F, 5yj3_D, 2kmk_A, 6ml4_A, 8h9h_G, 7ysf_A, 7n5w_A, 1g2f_F, 5ei9_F, 4m9v_C, 6m3d_C, 2hos_A, 3a01_E, 1fjl_B, 3cmy_A, 3d1n_M, 1ig7_A, 2lkx_A, 1nk2_P, 1zq3_P, 2ld5_A, 1jgg_B, 3rkq_B, 2r5y_A, 1b72_A, 4xrs_G, 4cyc_A, 2hdd_A, 7psx_B, 1puf_B, 9b8u_A, 5flv_I, 8osb_E, 7xrc_C, 2xsd_C, 4qtr_D, 1du0_A, 8bx1_A, 8g87_X, 2h8r_B, 8ejp_B, 1puf_A, 6a8r_A, 5zfz_A, 3lnq_A, 7q3o_C, 1au7_A, 5hod_A, 5jlw_D, 8eml_B, 8ik5_C, 6ido_B, 1le8_A, 1e3o_C, 1o4x_A, 5zjt_E, 6es3_K |
| Binding Motifs: | M1077_1.02 CTAATTAA |
| Related annotations: | PaperBLAST |
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