Transcription Factor

						

			
Accessions: Q4H2X8 (JASPAR 2024)

			
Names: Q4H2X8_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2X8
Length: 388
Pfam Domains:   230-304 Pou domain - N-terminal to homeobox domain
  320-376 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MFTNMLAPHHHHRPPSPPTTMTPLNTSYGEQKYAPLHNAADAVRRHCMASPVAYSGNLFA   60
  61 GFDESFLARQAEALAAVEYPGKSQFKPEPTNHSYYPPAPHYVTQQHTTSAVPPPVYSSMH  120
 121 PPPAFHHSAALQTSLDSSDVIDQLGSSHCGLPTYQPPTFNSSVMMTSDVTSQPHYITHPA  180
 181 PTYNPPNHFHPTSSAMHSTVSVTPISAPIITQAGSPPPSVPSFTSNEYDADPRELEAFAE  240
 241 RFKQRRIKLGVTQNDVGQALANLKLPGVGSLSQSTICRFESLTLSHNNMVALKPILITWL  300
 301 EKAEEEHRRKMENAAMGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKK  360
 361 NVVRVWFCNQRQKQKRMKFSAFNGDVIM
Interface Residues: 253, 254, 272, 273, 274, 275, 277, 278, 284, 288, 320, 321, 322, 323, 361, 362, 364, 365, 368, 369, 371, 372, 373, 376
3D-footprint Homologues: 3cro_R, 7u0g_M, 3d1n_M, 8bx1_A, 1e3o_C, 1au7_A, 2xsd_C, 7xrc_C, 1o4x_A, 8g87_X, 1puf_A, 8ejp_B, 6a8r_A, 1fjl_B, 8pmf_A, 5zfz_A, 3cmy_A, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1jgg_B, 7q3o_C, 2ld5_A, 6es3_K, 2r5y_A, 8ik5_C, 5hod_A, 2hdd_A, 1puf_B, 8osb_E, 8eml_B, 1b72_A, 3a01_E, 7psx_B, 5flv_I, 9b8u_A, 5zjt_E, 3rkq_B, 5jlw_D, 1le8_A, 1ig7_A, 4qtr_D, 4xrs_G, 1du0_A, 2d5v_B
Binding Motifs: UN0466.1 atwawthATAAATwawthat
MA2116.1 ATAAAT
			
Publications: Candiani S, Pennati R, Oliveri D, Locascio A, Branno M, Castagnola P, Pestarino M, De Bernardi F. Ci-POU-IV expression identifies PNS neurons in embryos and larvae of the ascidian Ciona intestinalis. Dev Genes Evol 215:41-5 (2005). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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