Transcription Factor

						

			
Accessions: T060969_1.02 (CISBP 1.02)

			
Names: NCU06503, T060969_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 790
Pfam Domains:     40-62 C2H2-type zinc finger
    56-78 Zinc-finger double domain
    68-91 C2H2-type zinc finger
  305-492 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MPGASVAVAPTTAPATTTPAPTSASTPRKAPGATQPERKYKCQFCARAFSRSEHRSRHER   60
  61 SHTKERPFKCLKCRSTFVRRDLLLRHDRTVHAKDGGIPLHSDGKRRGGPKAAPRPATGPA  120
 121 KTPMDIDTSALEQLEASSDATSQARANGAPYDGNGTMSFSQTSTPTIEPSVPFTNGALGL  180
 181 PQWDSFISHDSKAHSVISGPGSFDTSHPNHMAPMGGQHINGLPLSSLPPSVNGTPTPQSP  240
 241 FLPHRTHTPVDATQAHAGQKPPPPQINSDEERNMILDNIRAHDAEHALPEGFRVPSLPSI  300
 301 NRYLATYFGLFHHHLPFLHPASFEPTRVSPPLLLALLSIGALYAFDQENAYMLHIGSKIL  360
 361 VNQFLQHKENFSSRKCPLWTMQSSLLNMIFASWSGDPKGLEWACSIKSLLANMVAGNRYE  420
 421 LKLRQEAREGRPPTRAEWVEDEGCRRTYYAVYIFFGLLTLTFNHTPAINFNEFEDLQLPA  480
 481 TEFLWNVKVADEVAWQKHLEASPAPTFMVAHDNLFQGETLTYSAFGTRVMINALFLEVWY  540
 541 HKRSPEALQDVVTEYKLRLALETWEKSLEFCEHETVAAPLHTPQTGHPLIFNAKAMYRNA  600
 601 RARLEVDLKTVQEALRYHDSYEVAAAMSNARDRVRRSGEMIKVIQVCYDCIETAVDTGVR  660
 661 WVARTSPTNWSIEHPLGGMDLMIILSLWLYRLEHDEEQATEEEQVMYKRVRELFARGLQE  720
 721 KIDGHLGAVVARLWASMLGEVVVWGITRVMADSFRLHEQALIGYVDDIEASPSVTTPSMT  780
 781 SQGADEDSVY
Interface Residues: 22, 25, 28, 32, 49, 50, 51, 52, 53, 54, 56, 57, 58, 61, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 90
3D-footprint Homologues: 5kkq_D, 7w1m_H, 1tf3_A, 8cuc_F, 7y3l_A, 1g2f_F, 3uk3_C, 2kmk_A, 7ysf_A, 6blw_A, 5k5l_F, 2lt7_A, 6u9q_A, 5yel_A, 4x9j_A, 8ssq_A, 1f2i_J, 2wbs_A, 8gn3_A, 7n5w_A, 5ei9_F, 2jpa_A, 6jnm_A, 5kl3_A, 1ubd_C, 8h9h_G, 7txc_E, 6a57_A, 5k5i_A, 1llm_D, 6ml4_A, 5v3j_F, 2drp_D, 2gli_A, 4m9v_C, 6e94_A, 7y3m_I, 1tf6_A, 5yj3_D, 8i54_A
Binding Motifs: M0482_1.02 rgGyGGGGya
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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