Transcription Factor
| Accessions: | T01065 (AthalianaCistrome v4_May2016), STOP1 (EEADannot 2025-01-07) |
| Names: | AT1G34370, STOP1, T01065;, Q9C8N5;At1g34370 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, EEADannot 2025-01-07 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2, family:Znf_C2H2_sf |
| Length: | 499 |
| Pfam Domains: | 245-266 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 METEDDLCNTNWGSSSSKSREPGSSDCGNSTFAGFTSQQKWEDASILDYEMGVEPGLQES 60 61 IQANVDFLQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQ 120 121 QQLITTDLTSIIIQLISTAGSLLPSVKHNMSTAPGPFTGQPGSAVFPYVREANNVASQSQ 180 181 NNNNCGAREFDLPKPVLVDEREGHVVEEHEMKDEDDVEEGENLPPGSYEILQLEKEEILA 240 241 PHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFL 300 301 GCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNK 360 361 WLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKPSASTSTQRGSSEGGNNNQGMVGFN 420 421 LGSASNANQETTQPGMTDGRICFEESFSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIA 480 481 NACGFSPRNVGESVSDTSL |
| Interface Residues: | 224, 227, 233, 255, 256, 257, 258, 260, 261, 263, 264, 267, 273, 275, 276, 279, 282, 284, 285, 288, 300, 301, 303, 313, 315, 316, 322, 323, 345, 346, 347, 348, 351, 371, 372, 373, 374, 377 |
| 3D-footprint Homologues: | 8cuc_F, 7txc_E, 7y3l_A, 8h9h_G, 6u9q_A, 2kmk_A, 7n5w_A, 7ysf_A, 5v3j_F, 6e94_A, 7y3m_I, 2jpa_A, 1ubd_C |
| Binding Motifs: | M0326 aCCTtCmCCRGwTra M0338 CCTtCmCCAGaTrmamCYt EEAD0144 sRGrvArrhyhTwhsYb |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.