Transcription Factor
| Accessions: | T057850_1.02 (CISBP 1.02) |
| Names: | CG4854, T057850_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:B1H, family:C2H2 ZF |
| Length: | 319 |
| Pfam Domains: | 12-80 Zinc-finger associated domain (zf-AD) 178-200 Zinc finger, C2H2 type 178-200 C2H2-type zinc finger 178-201 C2H2-type zinc finger 193-216 Zinc-finger double domain 205-228 C2H2-type zinc finger 206-228 Zinc finger, C2H2 type 206-228 C2H2-type zinc finger 221-244 Zinc-finger double domain 233-244 C2H2-type zinc finger 234-256 Zinc finger, C2H2 type 234-256 C2H2-type zinc finger 251-272 Zinc-finger double domain 261-284 C2H2-type zinc finger 262-284 Zinc finger, C2H2 type 262-284 C2H2-type zinc finger 277-300 Zinc-finger double domain 290-300 C2H2-type zinc finger 290-312 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MHTNVDSRDLKCRICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDWPNRICTSCALL 60 61 LRAALKLRSLCQQTEKDLKEQKLQEINIEIVHDEQETKKKTESRDLSKNEATGSDSELEY 120 121 EYLDSYDVTLESSEDVACSADELVSIEPAISAPEESVYSLSPKPVTFEDEDSGQAASFTC 180 181 NICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCD 240 241 SRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFS 300 301 QLHHKNSHEKSHKRTKEVK |
| Interface Residues: | 188, 189, 190, 191, 192, 195, 196, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 229, 244, 245, 246, 247, 248, 251, 254, 255, 272, 273, 274, 275, 276, 277, 278, 279, 301, 302, 303, 304, 307 |
| 3D-footprint Homologues: | 1tf3_A, 7w1m_H, 5und_A, 5k5i_A, 8ssu_A, 5v3j_F, 2gli_A, 1tf6_A, 6wmi_A, 7eyi_G, 4m9v_C, 2i13_A, 7ysf_A, 8ssq_A, 7n5w_A, 2kmk_A, 6ml4_A, 6blw_A, 5kkq_D, 7txc_E, 5ei9_F, 8h9h_G, 2lt7_A, 6e94_A, 5yel_A, 2jpa_A, 1ubd_C, 6jnm_A, 1mey_C, 1f2i_J, 1g2f_F, 6u9q_A, 4x9j_A, 5kl3_A, 6a57_A, 3uk3_C, 8cuc_F, 7y3l_A, 2drp_D, 8gn3_A, 1llm_D, 2wbs_A, 7y3m_I, 5yj3_D |
| Binding Motifs: | M4867_1.02 GtgGTTGGCAAC |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.