Transcription Factor
Accessions: | AtMYB40 (AthaMYB 1.0) |
Names: | AtMYB40, Myb domain protein 40, MYB transcription factor, MYB40-putative transcription factor |
Organisms: | Arabidopsis thaliana |
Libraries: | AthaMYB 1.0 1 1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
Uniprot: | Q9LY95 |
Length: | 264 |
Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-77 Myb-like DNA-binding domain 67-110 Myb-like DNA-binding domain 70-119 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MGRKPCCDKIGLKRGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINY 60 61 LRPDLKRGGFTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKKMKHLG 120 121 LDPATHKPMNDITHQTDPNQDKKPNMCSTINEGEEIKDQTPKDDVITETTKTLMLSDNDE 180 181 ELVAKNCKILCAEEVDLESLFETQCNEISSSSFSSLCSNISRSESSSYLAEDSISLEQWD 240 241 LDMTDPFVPWDLFANLDDNLFLL* |
Interface Residues: | 14, 49, 50, 51, 52, 54, 55, 59, 60, 101, 102, 105, 106, 109, 110, 111 |
3D-footprint Homologues: | 3osg_A, 2kdz_A, 7xur_A, 1mse_C, 6kks_A, 3zqc_A, 7c4r_A |
Binding Motifs: | AtMYB40_I wwmaGTTr AtMYB40_II rbTrGTTr |
Binding Sites: | AAAAGTTA ACAAGTTA AGGTTA AGTAGTTA AGTGGTTA ATTAGTTG GCTTGTTG GTCAGTTA GTTAGTTG TACTGTTG TAGTTA TGCGGTTG |
Publications: | Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.