Transcription Factor

						

			
Accessions: AuxinResponseFactor36 (EEADannot 2023-12-22)

			
Names: ARF36, GRMZM2G702026
Organisms: Zea mays
Libraries: EEADannot 2023-12-22 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Notes: family:ARF
Length: 677
Pfam Domains:   122-222 B3 DNA binding domain
  248-333 Auxin response factor
  462-636 AUX/IAA family
Sequence: 
(in bold interface residues)		   1 MAEAGVARGSGSAGDALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQ   60
  61 HLPLFNLPHKILCKVVNVELRAETDSDEVYAQIMLQPQTEQSEPTSPDPEPPEPERCNIH  120
 121 SFCKTLTASDTSTHGGFSVLRRHAEECLPQLDMTQNPPWQELVAKDLHGNEWHFRHIFRG  180
 181 QPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSM  240
 241 HLGVLATASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDE  300
 301 SPERRFSGTIIGMGCMPANSTSPWANSEWRSLKVQWDEPSAILRPDRVSPWEVEPLDRTN  360
 361 PQPPQPPLRNKRARPPASPSIAPELAPVFGFWKSPAEPAQAFSFSGLQRTQELYHSSPSS  420
 421 MFSSSLNVGFNPKYEGPTPNTNHLYWTMRETRTESYSASINKAPTEKKQESTTSGCRLFG  480
 481 IEIGSSAVSPVVTVASVGHDPPPPALSVDAESDQLSQPSHANKATDAPAASSDRSPNETE  540
 541 SRQARSCTKVIMQGVAVGRAVDLTRLDGYDDLRRKLEEMFDIPGELSASLKKWKVIYTDD  600
 601 EDDMMLVGDDPWSEFCRMVKRIYIYSYEEAKSLTPKAKLPAIGGDTGVKPDPSKLPPESD  660
 661 VPQSDSDNSAPVAADKD
Interface Residues: 129, 134, 135, 136, 138, 179, 181, 182, 184
3D-footprint Homologues: 6ycq_A, 7et6_A, 6sdg_B
Binding Motifs: EEAD0039 cGGGGGACA
EEAD0040 mrACAwvkghwdcmbwTGTyk
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.