Transcription Factor
| Accessions: | T151041_1.02 (CISBP 1.02), Q9MAH8 (JASPAR 2024), T01674 (AthalianaCistrome v4_May2016) |
| Names: | T151041_1.02;, TCP3, TCP3_ARATH, AT1G53230, T01674; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 391 |
| Pfam Domains: | 47-154 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MAPDNDHFLDSPSPPLLEMRHHQSATENGGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAK 60 61 GPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQLPPWNPADTLR 120 121 QHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNESSFLPASMDSDSIADTIKSF 180 181 FPVASTQQSYHHQPPSRGNTQNQDLLRLSLQSFQNGPPFPNQTEPALFSGQSNNQLAFDS 240 241 STASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRG 300 301 PLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEF 360 361 SGFRIPARFQGEQEEHGGDNKPSSASSDSRH |
| Interface Residues: | 51, 52, 53, 66, 68 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D |
| Binding Motifs: | M1645_1.02 kgGGaCCAch M0751 / MA1289.1 rtkGGGACCAChw M0750 dtkGGGACCACh MA1289.2 GGGACCAC |
| Binding Sites: | MA1289.2.7 MA1289.1.1 / MA1289.1.2 / MA1289.1.3 / MA1289.1.5 MA1289.1.10 MA1289.1.11 MA1289.1.12 MA1289.1.13 MA1289.1.14 MA1289.1.15 MA1289.1.16 MA1289.1.17 MA1289.1.18 MA1289.1.19 MA1289.1.20 MA1289.1.4 MA1289.1.6 / MA1289.1.8 MA1289.1.7 MA1289.1.9 MA1289.2.19 MA1289.2.6 / MA1289.2.8 MA1289.2.4 MA1289.2.14 MA1289.2.20 MA1289.2.1 / MA1289.2.2 / MA1289.2.3 MA1289.2.10 MA1289.2.11 MA1289.2.12 MA1289.2.13 MA1289.2.15 MA1289.2.16 MA1289.2.17 MA1289.2.18 MA1289.2.5 MA1289.2.9 |
| Publications: | Kosugi S., Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family.. Plant J. 30:337-348 (2002). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.