Transcription Factor

Accessions: T151041_1.02 (CISBP 1.02), Q9MAH8 (JASPAR 2024), T01674 (AthalianaCistrome v4_May2016)
Names: T151041_1.02;, TCP3, TCP3_ARATH, AT1G53230, T01674;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:TCP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq
Length: 391
Pfam Domains: 47-154 TCP family transcription factor
Sequence:
(in bold interface residues)
1 MAPDNDHFLDSPSPPLLEMRHHQSATENGGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAK 60
61 GPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQLPPWNPADTLR 120
121 QHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNESSFLPASMDSDSIADTIKSF 180
181 FPVASTQQSYHHQPPSRGNTQNQDLLRLSLQSFQNGPPFPNQTEPALFSGQSNNQLAFDS 240
241 STASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRG 300
301 PLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEF 360
361 SGFRIPARFQGEQEEHGGDNKPSSASSDSRH
Interface Residues: 51, 52, 53, 66, 68
3D-footprint Homologues: 7vp2_B, 7vp3_D
Binding Motifs: M1645_1.02 kgGGaCCAch
M0751 / MA1289.1 rtkGGGACCAChw
M0750 dtkGGGACCACh
MA1289.2 GGGACCAC
Binding Sites: MA1289.2.7
MA1289.1.1 / MA1289.1.2 / MA1289.1.3 / MA1289.1.5
MA1289.1.10
MA1289.1.11
MA1289.1.12
MA1289.1.13
MA1289.1.14
MA1289.1.15
MA1289.1.16
MA1289.1.17
MA1289.1.18
MA1289.1.19
MA1289.1.20
MA1289.1.4
MA1289.1.6 / MA1289.1.8
MA1289.1.7
MA1289.1.9
MA1289.2.19
MA1289.2.6 / MA1289.2.8
MA1289.2.4
MA1289.2.14
MA1289.2.20
MA1289.2.1 / MA1289.2.2 / MA1289.2.3
MA1289.2.10
MA1289.2.11
MA1289.2.12
MA1289.2.13
MA1289.2.15
MA1289.2.16
MA1289.2.17
MA1289.2.18
MA1289.2.5
MA1289.2.9
Publications: Kosugi S., Ohashi Y. DNA binding and dimerization specificity and potential targets for the TCP protein family.. Plant J. 30:337-348 (2002). [Pubmed]
Related annotations: PaperBLAST

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